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Table 2 Consensus information across SNP chips

From: SNPchiMp: a database to disentangle the SNPchip jungle in bovine livestock

  Bov.3ka Bov.LDb Bov.SNP50v.1c Bov.SNP50v.2d Bov.HDe Axiom BOS 1f
Bov.3k 3,204 (304)      
Bov.LD 2,388 (229) 7,633 (724)     
Bov.SNP50v.1 3,190 (304) 7,589 (724) 58,276 (4,275)    
Bov.SNP50v.2 3,122 (298) 7,578 (724) 56,494 (4,154) 58,763 (4,154)   
Bov.HD 2,915 (275) 7,561 (717) 52,569 (3,835) 53,099 (3,754) 781,797 (3,835)  
Axiom BOS 1 1,861 (187) 4,510 (450) 38,527 (2,797) 38,376 (2,712) 87,398 (2,496) 648,875 (0)
  1. aIllumina Golden Gate Bovine3K BeadChip.
  2. bIllumina Infinium BovineLD BeadChip.
  3. cIllumina Infinium BovineSNP50 v.1 BeadChip.
  4. dIllumina Infinium BovineSNP50 v.2 BeadChip.
  5. eIllumina Infinium BovineHD BeadChip.
  6. fAffymetrix Axiom Genome-Wide BOS 1.
  7. For across platform integration, rs IDs were used. Cross-referenced IDs are in parenthesis. Total number of SNP are displayed on the diagonal.