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Table 2 Consensus information across SNP chips

From: SNPchiMp: a database to disentangle the SNPchip jungle in bovine livestock

 

Bov.3ka

Bov.LDb

Bov.SNP50v.1c

Bov.SNP50v.2d

Bov.HDe

Axiom BOS 1f

Bov.3k

3,204 (304)

     

Bov.LD

2,388 (229)

7,633 (724)

    

Bov.SNP50v.1

3,190 (304)

7,589 (724)

58,276 (4,275)

   

Bov.SNP50v.2

3,122 (298)

7,578 (724)

56,494 (4,154)

58,763 (4,154)

  

Bov.HD

2,915 (275)

7,561 (717)

52,569 (3,835)

53,099 (3,754)

781,797 (3,835)

 

Axiom BOS 1

1,861 (187)

4,510 (450)

38,527 (2,797)

38,376 (2,712)

87,398 (2,496)

648,875 (0)

  1. aIllumina Golden Gate Bovine3K BeadChip.
  2. bIllumina Infinium BovineLD BeadChip.
  3. cIllumina Infinium BovineSNP50 v.1 BeadChip.
  4. dIllumina Infinium BovineSNP50 v.2 BeadChip.
  5. eIllumina Infinium BovineHD BeadChip.
  6. fAffymetrix Axiom Genome-Wide BOS 1.
  7. For across platform integration, rs IDs were used. Cross-referenced IDs are in parenthesis. Total number of SNP are displayed on the diagonal.
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BMC Genomics

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