Table 1 Statistics on raw and pre-processed sequencing data across the eight samples
From: Transcriptome sequencing for high throughput SNP development and genetic mapping in Pea
| Â | Raw data | Pre-processed data | Processing details | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Nb reads | Nb bases | Average length | % 300-600 bp | Nbreads | Nbbases | Average length | % 300-600 bp | % of bases removed | Pyrocleaner | Medicago repeats | PCR oligos | Chloroplast |
Champagne | 496 034 | 181 943 498 | 366.8 | 74.75% | 414 114 | 150 011 369 | 362.2 | 73.23% | 17.56% | 10.85% | 1.21% | 5.25% | 0.88% |
Cherokee | 574 074 | 197 526 312 | 344.1 | 70.70% | 458 682 | 155 095 699 | 338.1 | 67.38% | 21.48% | 15.00% | 1.11% | 5.31% | 0.91% |
Hardy | 526 038 | 187 918 202 | 357.2 | 73.75% | 443 607 | 155 739 374 | 351.1 | 70.89% | 17.14% | 10.39% | 1.33% | 5.24% | 0.80% |
Kayanne | 413 098 | 139 462 293 | 337.6 | 68.18% | 343 271 | 114 332 181 | 333.1 | 65.09% | 18.04% | 10.73% | 1.36% | 5.95% | 0.72% |
Lumina | 474 380 | 168 623 198 | 355.5 | 70.91% | 376 824 | 132 088 228 | 350.5 | 68.87% | 21.66% | 14.04% | 1.30% | 6.02% | 1.25% |
Panache | 591 513 | 205 278 821 | 347.0 | 70.78% | 453 509 | 153 535 495 | 338.6 | 66.84% | 25.22% | 18.01% | 1.32% | 5.68% | 1.32% |
365 255 | 138 664 207 | 379.6 | 77.54% | 267 463 | 98 969 773 | 370.0 | 75.17% | 27.88% | 20.31% | 1.73% | 6.29% | 0.94% | |
Terese | 386 405 | 149 269 177 | 386.3 | 78.52% | 284 948 | 107 897 288 | 378.7 | 77.00% | 27.71% | 19.74% | 1.6% | 5.71% | 1.81% |
Total | 3 826 797 | 1 368 685 708 | 359.3 | 72.85% | 3 042 418 | 1 067 669 407 | 352.8 | 70.12% | 21.12% | 14.76% | 1.36% | 5.64% | 1.07% |