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Table 1 Statistics on raw and pre-processed sequencing data across the eight samples

From: Transcriptome sequencing for high throughput SNP development and genetic mapping in Pea

  Raw data Pre-processed data Processing details
  Nb reads Nb bases Average length % 300-600 bp Nbreads Nbbases Average length % 300-600 bp % of bases removed Pyrocleaner Medicago repeats PCR oligos Chloroplast
Champagne 496 034 181 943 498 366.8 74.75% 414 114 150 011 369 362.2 73.23% 17.56% 10.85% 1.21% 5.25% 0.88%
Cherokee 574 074 197 526 312 344.1 70.70% 458 682 155 095 699 338.1 67.38% 21.48% 15.00% 1.11% 5.31% 0.91%
Hardy 526 038 187 918 202 357.2 73.75% 443 607 155 739 374 351.1 70.89% 17.14% 10.39% 1.33% 5.24% 0.80%
Kayanne 413 098 139 462 293 337.6 68.18% 343 271 114 332 181 333.1 65.09% 18.04% 10.73% 1.36% 5.95% 0.72%
Lumina 474 380 168 623 198 355.5 70.91% 376 824 132 088 228 350.5 68.87% 21.66% 14.04% 1.30% 6.02% 1.25%
Panache 591 513 205 278 821 347.0 70.78% 453 509 153 535 495 338.6 66.84% 25.22% 18.01% 1.32% 5.68% 1.32%
Pocket 365 255 138 664 207 379.6 77.54% 267 463 98 969 773 370.0 75.17% 27.88% 20.31% 1.73% 6.29% 0.94%
Terese 386 405 149 269 177 386.3 78.52% 284 948 107 897 288 378.7 77.00% 27.71% 19.74% 1.6% 5.71% 1.81%
Total 3 826 797 1 368 685 708 359.3 72.85% 3 042 418 1 067 669 407 352.8 70.12% 21.12% 14.76% 1.36% 5.64% 1.07%