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Table 3 Biological process (BP) terms and annotation clusters down-regulated in pollen deprived bees at 3d and 8d

From: Transcriptional markers of sub-optimal nutrition in developing Apis mellifera nurse workers

BP term or cluster

Description

N

X 2 adj A

OrthologuesB

GO:0007155

Cell adhesion (BP)C

6

<0.0001

FBgn0034660, FBgn0000547, FBgn0031879, FBgn0000464, FBgn0000117, FBgn0026562

GO:0007155, GO:0008360

Cell adhesion (BP)C, regulation of cell shape (BP)C

3

<0.0001

FBgn0000547, FBgn0000464, FBgn0000117

GO:0007391

Dorsal closure (BP)C

3

0.0037

FBgn0000299, FBgn0000547, FBgn0000117

GO:0046331

Lateral inhibition (BP)C

4

0.0059

FBgn0010473, FBgn0000547, FBgn0243514, FBgn0053196

IPR002172

Low-density lipoprotein (LDL) receptor class A repeat

3

<0.0001

FBgn0031879, FBgn0053196, FBgn0261341

IPR013032

EGF-like region, conserved site

5

<0.0001

FBgn0003137, FBgn0026403, FBgn0031879, FBgn0243514, FBgn0053196

GO:0005509

Calcium ion binding (MF)

7

<0.0001

FBgn0026403, FBgn0031879, FBgn0000079, FBgn0031464, FBgn0037963, FBgn0053196, FBgn0026562

IPR003599, IPR007110

Immunoglobulin subtype, Immunoglobulin-like 6

6

<0.0001

FBgn0003137, FBgn0010473, FBgn0000547, FBgn0005666, FBgn0000464, FBgn0004369

IPR003599, IPR007110, IPR003961, IPR008957

Immunoglobulin subtype, Immunoglobulin-like, Fibronectin, type III, Fibronectin type III domain

5

<0.0001

FBgn0010473, FBgn0000547, FBgn0005666, FBgn0000464, FBgn0004369

IPR001660, IPR010993, IPR011510, IPR021129

Sterile alpha motif domain, Sterile alpha motif homology, Sterile alpha motif, type 2, Sterile alpha motif, type 1

3

<0.0001

FBgn0000182, FBgn0031762, FBgn0039075

IPR018247

EF-Hand 1, calcium-binding site

3

0.0019

FBgn0031464, FBgn0013809, FBgn0026562

GO:0004867

Serine-type endopeptidase inhibitor activity (MF)

3

<0.0001

FBgn0003137, FBgn0026721, FBgn0053196

GO:0006030, GO:0008061, IPR002557

Chitin metabolic process (BP)C, chitin binding (MF), Chitin binding domain

3

<0.0001

FBgn0027600, FBgn0051973, FBgn0261341

IPR017853

Glycoside hydrolase, superfamily

3

<0.0001

FBgn0053080, FBgn0000079, FBgn0026415

GO:0030036

Actin cytoskeleton organizationD

2

0.0080

FBgn0000182, FBgn0085447

GO:0006470

Protein dephosphorylationD

2

0.0242

FBgn0000464, FBgn0004369

GO:0007498

Mesoderm developmentD

2

0.0130

FBgn0005666, FBgn0026562

GO:0008045

Motor axon guidanceD

2

0.0013

FBgn0000464, FBgn0004369

GO:0005975

Carbohydrate metabolic processD

2

0.0008

FBgn0053080, FBgn0000079

GO:0007414

Axonal defasciculationD

2

<0.0001

FBgn0010473, FBgn0004369

GO:0007156

Homophilic cell adhesionD

2

0.0001

FBgn0000547, FBgn0037963

GO:0006979

Response to oxidative stressD

2

0.0033

FBgn0031464, FBgn0036756

GO:0016337

Cell-cell adhesionD

2

<0.0001

FBgn0000547, FBgn0000117

  1. AX2adj refers to the significance of the Fisher’s exact test with a Benjamini-Hochberg correction for multiple comparisons.
  2. BOrthologues correspond to those pictured in Figure 2B (left panel) and represent Drosophila melanogaster genes that are listed in FlyBase.
  3. CTerms that were significant BP terms and were part of a significant gene annotation cluster.
  4. DTerms that represented significant BP terms but did not form a significant gene annotation cluster.