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Table 1 Identification of proteins in royal jelly

From: Comprehensive identification of novel proteins and N-glycosylation sites in royal jelly

Classification Accession -10lgP Coverage (%) Matches Unique Mass(Da) Protein name SignalP PSORT
YELLOW/MRJP family gi|58585098 566.72 96 742 166 48886 Major royal jelly protein 1 precursor - -
gi|58585108 527.66 93 437 100 51074 Major royal jelly protein 2 precursor - -
gi|58585142 487.03 88 354 12 61662 Major royal jelly protein 3 precursor - -
gi|284182838 357.38 89 236 15 53015 Major royal jelly protein 4 - -
gi|284812514 386.92 71 182 6 70182 Major royal jelly protein 5 - -
gi|58585188 282.69 58 57 7 49786 Major royal jelly protein 6 precursor - -
gi|62198227 422.37 84 182 70 50541 Major royal jelly protein 7 precursor - -
gi|58585070 131.13 15 3 3 46956 Major royal jelly protein 8 precursor - -
gi|67010041 221.7 45 26 10 48688 Major royal jelly protein 9 precursor - -
gi|148277624 146.46 19 6 6 48235 Yellow-e3 precursor* #
Metabolic activity gi|328787887 299.74 26 40 37 188194 Lysosomal alpha-mannosidase - -
gi|89885579 290.12 50 33 3 65565 Alpha-glucosidase - -
gi|58585144 227.31 43 7 3 55947 Alpha-amylase precursor - -
gi|66564326 185.29 37 10 6 52947 Plasma glutamate carboxypeptidase isoform 1 - -
gi|328778095 116.42 10 4 4 56432 Lysosomal Pro-X carboxypeptidase* #
gi|66560290 102.39 10 3 3 42222 Lysosomal aspartic protease* #
gi|328782027 93.88 6 4 4 88720 Membrane metallo-endopeptidase 1* #
gi|48118838 276.66 56 32 31 58571 Glucosylceramidase - -
gi|66524161 196.85 59 15 14 25186 Ferritin heavy chain - -
gi|328779534 220.38 10 23 20 79344 Hypothetical protein LOC552041 - -
gi|328780642 167.48 16 9 8 64654 Matrix metalloproteinase 14* #
gi|328784061 154.24 27 6 5 34132 Pancreatic triacylglycerol lipase* #
Health promotion activity gi|58585090 389.52 76 137 77 67938 Glucose oxidase - -
gi|166795901 259.92 93 46 14 21348 Apolipophorin-III protein precursor - -
gi|328782084 240.41 41 7 4 59502 Antithrombin-III - -
gi|60115688 226.26 71 39 5 24819 Icarapin precursor - -
gi|254910938 214.17 75 14 4 10717 Defensin-1 preproprotein - -
gi|187281543 150.07 16 11 10 87937 Venom dipeptidyl Peptidase 4 precursor* #
gi|110755367 142.44 13 7 7 75706 Toll-like receptor 13 isoform 1 - -
gi|48101366 138.63 15 5 5 44639 Venom serine protease 34* #
gi|254548157 102.39 37 3 2 12611 Hymenoptaecin precursor* #
gi|328790726 243.78 70 28 19 42665 Venom acid phosphatase Acph 1 - -
gi|66507455 188.31 27 11 11 39483 Venom protease* #
gi|328792524 89.27 9 5 2 90763 Hypothetical protein LOC408570* #
gi|110758964 221.47 83 17 4 10161 Regucalcin - -
gi|66565246 83.06 16 3 2 17081 Lysozyme isoform 1* #
Developmental process gi|66514614 165.33 19 8 4 48741 Idgf4 - -
gi|110766389 139.29 22 5 5 30201 Protein takeout - -
gi|66521538 101.17 11 2 2 33735 Protein CREG1* #
gi|94158822 86.71 22 2 2 15201 Odorant binding protein 14 precursor - -
Unknown gi|48094573 292.99 64 45 32 19434 Hypothetical protein LOC408608 - -
  gi|110763647 109.47 27 5 4 18478 Hypothetical protein LOC726323 - -
  1. Note: All of the identified proteins are of Apis mellifera origin. Accession is the unique number given to mark the entry of a protein in the database of Apis (downloaded April 2012, version 4.5 of the honeybee genome) using in-house PEAKS software (version 6.0, Bioinformatics Solutions Inc.). “-10logP” is the score calculated by PEAKS software. Sequence coverage is the ratio of the number of amino acids in every peptide that matches with the mass spectrum divided by the total number of amino acids in the protein sequence. Matches are the number of experiment fragmentation spectra paired to a theoretical segment of protein. The number of unique peptides refers to the peptide sequences that are unique to an individual parent protein sequence. SignalP refers to the result researched with SignalP 4.1. PSORT refers to the result researched with PSORT II. “*” indicates the protein identified as novel in royal jelly. “√” indicates the protein identified with signal peptide by SignalP 4.1. “#” indicates the protein identified as extracellular by PSORT II. “-” indicates the protein did not be researched with SignalP 4.1 or PSORT II.