Table 3 Bovine specific miRNAs expressed in adipose tissue of all steers
From: MicroRNAs in bovine adipogenesis: genomic context, expression and function
microRNAs | Chromosome | Cluster | Location | Host gene1 | miRNA expression | Predicted targets2 | Seed region3 |
|---|---|---|---|---|---|---|---|
bta-miR-2478 | chr9 | no | intergenic | - | 10.90 ± 0.63 | 116 | UAUCCCA |
bta-miR-126-3p | chr11 | no | intronic | EGFL7 | 7.71 ± 0.63 | 26 | GUACCGU |
bta-miR-2305 | chr13 | no | intronic | RIN2 | 6.09 ± 1.19 | 109 | GGGGGUG |
bta-miR-2328-3p | chr18 | no | intronic | ZNF821 | 5.39 ± 1.22 | 144 | CCCCCUC |
bta-miR-1584 | chr3 | no | intronic | TAGLN2 | 5.13 ± 0.85 | 135 | UGGGGCU |
bta-miR-2888 | chr21 | no | intergenic | - | 4.60 ± 0.98 | 93 | GUGGGGU |
bta-miR-199c | chr19 | no | intronic | NUP88 | 4.01 ± 0.38 | 704 | ACAGUAG |
bta-miR-2881 | chr7 | no | intergenic | - | 3.95 ± 0.88 | 59 | GGGCGGG |
bta-miR-2332 | chr19 | no | intronic | UTP6 | 3.39 ± 0.39 | 392 | GGUUUAA |
bta-miR-2412 | chr3 | no | intergenic | - | 3.34 ± 0.99 | 135 | UGGGGCU |
bta-miR-2455 | chr7 | no | intergenic | - | 3.07 ± 1.14 | 413 | CUGUGCU |
bta-miR-2316 | chr15 | no | intergenic | - | 2.53 ± 0.76 | 8 | CUCCGGC |
bta-miR-2374 | chr22 | no | intergenic | - | 1.98 ± 0.83 | 135 | UGGGGCU |
bta-miR-2483 | chrX | no | intergenic | - | 1.62 ± 1.12 | 381 | AACAUCU |
bta-miR-2474 | chr8 | no | intronic | SHB | 1.61 ± 0.96 | 5 | ACCGGGC |
bta-miR-425-5p | chr22 | yes | intergenic | - | 1.61 ± 0.66 | 74 | UGACACG |
bta-miR-2892 | chr12 | no | intergenic | - | 1.52 ± 0.65 | 3 | GCGACGG |
bta-miR-1434 | chr7 | no | intronic | EEF2 | 1.02 ± 0.57 | 1134 | AAGAAAU |
bta-miR-2391 | chr26 | no | intergenic | - | 0.55 ± 0.40 | 2732 | AAAAAAA |
bta-miR-2898 | chr8 | no | intergenic | - | 0.37 ± 0.50 | 134 | GGUGGAG |
bta-miR-2424 | chr5 | no | intronic | NCAPD2 | 0.29 ± 0.49 | 225 | GAUCUUU |
bta-miR-2885 | chr29 | no | intergenic | - | 0.20 ± 0.34 | 27 | GGCGGCA |
bta-miR-2882 | chr7 | no | exonic | SMARCA4 | 0.15 ± 0.23 | 19 | GCCCGGG |