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Table 2 Counts of identified SNPs and of genes affected by them

From: Patchwork sequencing of tomato San Marzano and Vesuviano varieties highlights genome-wide variations

 

RSV

SM

 

SNPs

Genes

SNPs

Genes

Intergenic

188,769 (181,758)

16,705 (16,247)

158,964 (151,971)

14,530 (13,939)

Intronic

11,907 (11,766)

2,880 (2,836)

12,232 (11,979)

2,576 (2,490)

UTR

624 (610)

381 (376)

686 (671)

361 (353)

CDS

5,567 (5,368)

3,254 (3,132)

5,297 (5,083)

2,886 (2,752)

Total

206,867 (199,502)

23,220 (22,591)

177,179 (169,704)

20,353 (19,534)

  1. Results are given distinguishing in which region the SNPs are found, if they are in intergenic regions, in genes, in exonic regions or in the coding regions of genes using the ITAG23 annotation of reference genome For variants that insists on a gene, a count of affected genes is also given In brackets are given the numbers of the unambiguous SNPs.