Table 8 Fruit quality related genes affected by deleterious mutation in SM, RSV or both varieties
From: Patchwork sequencing of tomato San Marzano and Vesuviano varieties highlights genome-wide variations
SM | |||
|---|---|---|---|
Gene | Annotation | Variant | Score value |
Transcription factors | |||
Solyc01g1062302 | B3 domain-containing protein | V79F | −3233 |
Solyc03g1182902 | Auxin response factor 2 | S220G | −3818 |
Solyc04g0094402 | NAC domain protein | Y212C | −3401 |
Solyc04g0647701 | Zinc finger CCCH domain-containing protein 38 | K687Q | −29 |
Solyc10g0804101 | BZIP transcription factor | T403I | −4147 |
Transcription regulators | |||
Solyc07g0519801 | Chromodomain-helicase-DNA-binding protein 1-like | A618T | −2833 |
Solyc09g0760102 | PHD finger family protein | Y390C/L988F | −3167/−6472 |
Cell wall | |||
Solyc02g0782301 | Glucan synthase like 1 | V1659G | −5286 |
Solyc05g0518702 | Pollen allergen Phl p 11 | A134T | −3344 |
Solyc05g0554901 | Laccase-22 | R472H | −49 |
RSV | |||
Gene | Annotation | Variant | Score value |
Transcription factors | |||
Solyc01g1038301 | Zinc finger-homeodomain protein 2 | R56Q | −4000 |
Solyc03g0971202 | Heat stress transcription factor A3 | W469L | −4,548 |
Solyc07g0550001 | Myb-related transcription factor | T110I | −5433 |
Solyc08g0052902 | BZIP transcription factor 3 | E357G | −5548 |
Solyc08g0062401 | B3 domain-containing protein | R299W | −4223 |
Solyc09g0080402 | RNA polymerase sigma-70 factor | G436R | −5900 |
Transcription regulators | |||
Solyc01g0497401 | DNA repair and recombination protein RAD54-like | R155T | −4767 |
Solyc02g0646902 | Acetyltransferase-like protein | I12T | −3386 |
Cell wall | |||
Solyc01g0087201 | Mannan endo-1 4-beta-mannosidase | G215S | −5733 |
Solyc03g1153101 | Expansin | E146G | −3595 |
Solyc11g0565901 | Cellulose synthase | D100N | −4472 |
Common | |||
Gene | Annotation | Variant | Score value |
Transcription factors | |||
Solyc00g1983601 | Zinc finger CCCH domain-containing protein 30 | K188T | −4865 |
Solyc02g0773901 | WUSCHEL-related homeobox 11 | T291K | −2933 |
Solyc02g0815202 | Nibrin | F236L | −5433 |
Solyc03g0439102 | BSD domain containing protein | G54C | −8114 |
Solyc05g0502202 | G-box binding factor 3 | N335S | −4567 |
Solyc07g0418501 | Homeodomain-containing transcription factor FWA | I545T | −4584 |
Solyc09g0075502 | Zinc finger family protein | V111L | −3000 |
Solyc09g0075701 | MYB transcription factor | K112I | −6351 |
Solyc10g0181101 | MADS box transcription factor | L104P | −3739 |
Solyc12g0107601 | Transcription factor (Fragment) | A36V/G44C/L38P | −2844/−7506/−6344 |
Solyc12g0198201 | MYB transcription factor | K14R | −2942 |
Transcription regulators | |||
Solyc04g0086102 | Histone acetyltransferase | P1416L | −7522 |
Solyc06g0842502 | Kelch repeat and BTB domain-containing | A324T | −2700 |
Solyc08g0687701 | N-acetyltransferase | W198L | −12149 |
Solyc10g0062202 | Cell differentiation protein rcd1 | Q215E | −2957 |
Ripening ethylene related | |||
Solyc01g0791802 | Pectinesterase | T334I | −2612 |
Solyc01g0811801 | Beta-glucosidase | H83Y | −4364 |
Solyc01g0915302 | Fasciclin-like arabinogalactan protein 13 | S201Y | −3582 |
Solyc02g0676501 | Polygalacturonase 1 | G320S | −5337 |
Solyc05g0500102 | 1-aminocyclopropane-1-carboxylate synthase | T82A | −3776 |
Solyc05g0525301 | Endoglucanase 1 | A183V/I97T | −3085/−4045 |
Solyc08g0653202 | Transmembrane protein 222 | V157L | −2583 |
Solyc09g0076501 | Fasciclin-like arabinogalactan protein 7 | S104F | −5217 |
Solyc09g0102102 | Endoglucanase 1 | A306V | −3709 |