Table 2 Selection of homologous gene pairs in which the homologs of T. hassleriana are expressed in the flower and the A. thaliana homolog expression is absent from the flower
Gene abbreviation | Process/protein family | GO ID | T. hassleriana TSE (RPKM) | Expression in A. thaliana |
|---|---|---|---|---|
Anthocyanin accumulation | ||||
PGP10 | multidrug pheromone mdr abc transporter family | GO:0043481 | 63.79 | Mature pollen |
Cell growth | ||||
TTFP | tyrosine transaminase family protein | GO:0001560 | 194.20 | Root |
ARP2 | actin-related protein 2-like | GO:0009825 | 28.21 | Senescent leaf, cauline leaf, buds, flower, inflorescence shoot apex |
HB-2 | homeodomain-leucine zipper protein | GO:0009826 | 28.07 | Young leaf, mature leaf, cauline leaf, senescent leaf, pedicel, seed (torpedo stage embryo) |
LRX2 | leucine-rich repeat extensin-like protein 1 | GO:0009826 | 22.97 | Young leaf, pollen, seed (cotyledon stage embryo) |
PLLSP | pectate lyase family protein | GO:0042547 | 12.85 | Young leaf petiole, mature leaf (distal end), seed (curled cotyledon stage embryo) |
Flower development | ||||
ICMTA | protein-s-isoprenylcysteine o-methyltransferase a | GO:0009908 | 37,04 | Young leaf, cauline leaf, senescent leaf, young silique, seed (heart and torpedo stage embryo) |
SBP3 | selenium-binding protein | GO:0048573 | 24,26 | Imbibed seed |
BTB/POZ P | BTB/POZ domain-containing protein | GO:0048439 | 12,55 | Petals stamens |
TEM2 | ap2 erf and b3 domain-containing transcription factor rav2 | GO:0009910 | 12,28 | Cotyledon, young leaf, senescent leaf |
Development | ||||
JAL33 | jacalin-like lectin domain-containing protein | GO:0009793 | 302,33 | Root, hypocotyl |
MTSP2 | caffeoyl- o-methyltransferase | GO:0048316 | 47,03 | Seed (curled cotyledon, green cotyledon embryo stage), dry seed |
MTSP1 | s-adenosyl-l-methionine-dependent methyltransferase-like protein | GO:0010089 | 40,59 | Seed (walking stick, curled cotyledon, green cotyledon embryo stage) |
LRRTPKP | lrr receptor-like serine threonine-protein kinase rch1-like | GO:0048443 | 15,26 | Root, seed (torpedo stage embryo), imbibed seed |
CYP705A27 | cytochrome p450 | GO:0048589 | 11,86 | Root, seed (cotyledon embryo stage), dry seed |
EMB2271 | u3 small nucleolar rna-interacting protein 2-like | GO:0009553 | 11,81 | Stamen |
CYP705A | cytochrome p450 | GO:0048589 | 11,54 | Root |
GLUDOXRP | glutaredoxin-related protein | GO:0048653 | 7,40 | Pollen, seed (walking stick, curled cotyledon, green cotyledon stage embryo) |
LRRRPK | receptor-like protein kinase 2-like | GO:0048443 | 3,50 | Imbibed seed, root |