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Figure 7 | BMC Genomics

Figure 7

From: Transcriptome sequencing of Atlantic salmon (Salmo salar L.) notochord prior to development of the vertebrae provides clues to regulation of positional fate, chordoblast lineage and mineralisation

Figure 7

Actively regulated KEGG pathways in salmon notochord during segmentation. Numbers of differentially expressed genes (DEGs) were grouped by KEGG ID in pathways. Only genes with a blast score over 300 and fold change >1.5 from NOISeq were counted as DEGs and plotted in KEGG. Up-/down-regulated KEGG pathways from sumT1-T2 (510 ± 20 d°-610 ± 20 d°, pre-segmentation) were listed in (A). Up-/down-regulated KEGG pathways from sumT2-T3 (610 ± 20 d°- 710 ± 20 d°, segmentation) were listed in (B). Up-regulated pathways were ranked by the ratio of the number of up-/down-regulated genes (shown if the ratio is above 1), and vice versa for down-regulated pathways. Pathways with fewer than 10 DEGs (dotted vertical line) were considered to be insufficient for inclusion. Full maps of two pathways (asterisk marked) are illustrated in Additional file 4: Figure S3.

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BMC Genomics

ISSN: 1471-2164

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