Dynamics of the chili pepper transcriptome during fruit development

BMC Genomics

Table 2 Patterns of expression for genes, biological processes (BP) and metabolic pathways (MP)

Id	Pattern	Genes		BP		MP
		Number	%	Number	%	Number	%
1	DDD	51	0.15	1	0.11	2	1.32
2	DDS	77	0.23	5	0.57	2	1.32
3	DDI	11	0.03	6	0.69	4	2.63
4	DSD	286	0.84	22	2.51	11	7.24
5	DSS	537	1.58	31	3.54	4	2.63
6	DSI	145	0.43	43	4.91	3	1.97
7	DID	60	0.18	12	1.37	7	4.61
8	DIS	64	0.19	5	0.57	2	1.32
9	DII	88	0.26	18	2.06	1	0.66
10	SDD	146	0.43	17	1.94	3	1.97
11	SDS	224	0.66	13	1.49	0	0.00
12	SDI	37	0.11	12	1.37	4	2.63
13	SSD	1,290	3.79	92	10.51	26	17.11
14	SSS	28,392	83.34	328	37.49	31	20.39
15	SSI	882	2.59	100	11.43	16	10.53
16	SID	299	0.88	17	1.94	3	1.97
17	SIS	254	0.75	15	1.71	3	1.97
18	SII	142	0.42	17	1.94	2	1.32
19	IDD	136	0.40	11	1.26	4	2.63
20	IDS	107	0.31	11	1.26	2	1.32
21	IDI	38	0.11	17	1.94	1	0.66
22	ISD	232	0.68	18	2.06	7	4.61
23	ISS	307	0.90	16	1.83	3	1.97
24	ISI	133	0.39	27	3.09	4	2.63
25	IID	46	0.14	6	0.69	3	1.97
26	IIS	38	0.11	6	0.69	1	0.66
27	III	44	0.13	9	1.03	3	1.97
Totals		34,066		875		152

Patterns of expression are denoted by a decrease, D, steady state, S, or increase, I, in each one of the three consecutive intervals, 10 to 20, 20 to 40 and 40 to 60 DAA, respectively. All analyses were performed at 0.01 FDR. For the 27 possible patterns, data for individual genes (Genes), Biological Processes (BP) and Metabolic Pathways (MP) are presented; in each case the number and percentage of the item following each pattern are presented.

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