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Table 2 Patterns of expression for genes, biological processes (BP) and metabolic pathways (MP)

From: Dynamics of the chili pepper transcriptome during fruit development

Id Pattern Genes BP MP
   Number % Number % Number %
1 DDD 51 0.15 1 0.11 2 1.32
2 DDS 77 0.23 5 0.57 2 1.32
3 DDI 11 0.03 6 0.69 4 2.63
4 DSD 286 0.84 22 2.51 11 7.24
5 DSS 537 1.58 31 3.54 4 2.63
6 DSI 145 0.43 43 4.91 3 1.97
7 DID 60 0.18 12 1.37 7 4.61
8 DIS 64 0.19 5 0.57 2 1.32
9 DII 88 0.26 18 2.06 1 0.66
10 SDD 146 0.43 17 1.94 3 1.97
11 SDS 224 0.66 13 1.49 0 0.00
12 SDI 37 0.11 12 1.37 4 2.63
13 SSD 1,290 3.79 92 10.51 26 17.11
14 SSS 28,392 83.34 328 37.49 31 20.39
15 SSI 882 2.59 100 11.43 16 10.53
16 SID 299 0.88 17 1.94 3 1.97
17 SIS 254 0.75 15 1.71 3 1.97
18 SII 142 0.42 17 1.94 2 1.32
19 IDD 136 0.40 11 1.26 4 2.63
20 IDS 107 0.31 11 1.26 2 1.32
21 IDI 38 0.11 17 1.94 1 0.66
22 ISD 232 0.68 18 2.06 7 4.61
23 ISS 307 0.90 16 1.83 3 1.97
24 ISI 133 0.39 27 3.09 4 2.63
25 IID 46 0.14 6 0.69 3 1.97
26 IIS 38 0.11 6 0.69 1 0.66
27 III 44 0.13 9 1.03 3 1.97
Totals 34,066   875   152  
  1. Patterns of expression are denoted by a decrease, D, steady state, S, or increase, I, in each one of the three consecutive intervals, 10 to 20, 20 to 40 and 40 to 60 DAA, respectively. All analyses were performed at 0.01 FDR. For the 27 possible patterns, data for individual genes (Genes), Biological Processes (BP) and Metabolic Pathways (MP) are presented; in each case the number and percentage of the item following each pattern are presented.