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Table 2 Evaluation of enlarged “gold standard” gene set

From: Improving transcriptome construction in non-model organisms: integrating manual and automated gene definition in Emiliania huxleyi

  Transcripts Peptides
63 100 63 100
De Novo (CLC assembly cell) 75% 72% - -
Cufflinks 76% 78% - -
Partek genomics suite* 33% 24% - -
ESTs 70% 69% - -
TGICL 84% 81% 66% 62%
CAP3 97% 95% 75% 75%
Final collection 97% 95% 75% 75%
  1. The percentage of sequences found by each step of the transcriptome reconstruction is given.
  2. *Partek percentages are lower as the program was used to define transcripts in very limited regions.