Table 3 Splice junction sequence distribution
Donor | GC | GT | GA | AT | CT | Others |
|---|---|---|---|---|---|---|
Gold standard | 135 (56%) | 95 (40%) | 11 (4%) | Â | Â | Â |
ESTs | 13266 (39%) | 4708 (14%) | 1203 (4%) | 414 (1%) | 1122 (3%) | 13376 (39%) |
Cufflinks | 44991 (61%) | 27374 (37%) | Â | 708 (1%) | 285 | Â |
JGI best transcript | 80404 (82%) | 14387 (15%) | 1180 (1%) | 108 | 427 | 1135 (1%) |
Acceptor | AG | AC | GC | AT | Â | Others |
Gold standard | 241 (100%) | Â | Â | Â | Â | Â |
Cufflinks | 70512 (98.6%) | 812 (1%) | 182 | 29 | Â | Â |
JGI best transcript | 95694 (98%) | 250 | 277 | 75 | Â | 1331 (1.4%) |