Skip to main content

Table 3 Splice junction sequence distribution

From: Improving transcriptome construction in non-model organisms: integrating manual and automated gene definition in Emiliania huxleyi

Donor GC GT GA AT CT Others
Gold standard 135 (56%) 95 (40%) 11 (4%)    
ESTs 13266 (39%) 4708 (14%) 1203 (4%) 414 (1%) 1122 (3%) 13376 (39%)
Cufflinks 44991 (61%) 27374 (37%)   708 (1%) 285  
JGI best transcript 80404 (82%) 14387 (15%) 1180 (1%) 108 427 1135 (1%)
Acceptor AG AC GC AT   Others
Gold standard 241 (100%)      
Cufflinks 70512 (98.6%) 812 (1%) 182 29   
JGI best transcript 95694 (98%) 250 277 75   1331 (1.4%)