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Table 3 QTLs identified through a multi-SNP regression model fitted with net root growth in nutrient solution without aluminum (NRG_c) data

From: Genetic dissection of Al tolerance QTLs in the maize genome by high density SNP scan

QTL

Chr

SNP_ID

Position (Mbp)

-log10( P)

Effect

R P 2(%)

CI (Mbp)

qNRG_c1

1

S1_69700844

69.70

7.98

−15.97

25.06

67.25 - 71.15

qNRG_c3

3

S3_195644732

195.64

10.50

−18.97

32.18

187.71 - 195.96

qNRG_c6

6

S6_158261558

158.26

10.20

−18.46

31.35

156.99 - 158.45

R T 2 (%)

     

56.88

 
  1. Chr: maize chromosome; SNP_ID indicate the chromosome and the physical position in bp.
  2. The position of each QTL was determined in Mbp (Mega base pairs) as the highest –log10 (P-value).
  3. R P 2(%) is the percentage of the phenotypic variance explained by each QTL and R T 2(%) is the percentage of the phenotypic variance explained by the full model, including all significant QTLs.
  4. CI is the 95% confidence interval of the QTL position.
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BMC Genomics

ISSN: 1471-2164

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