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Table 5 Homeology between linkage groups

From: Linkage maps of the Atlantic salmon (Salmo salar) genome derived from RAD sequencing

Atlantic salmon Linkage groups Atlantic salmon Chromosomes No. of shared contigs Danzmann et al. [[6]] correspondence
4/11§* 6/3 25 E
10/25 9/20 11 G/H
1/12§* 2/5 9 B
9/21* 11/26 9 J
3/11 14/3 8 M
22/24§* 17/7 8 K
1/6§* 2/12 5 D
3/15 14/27 4 B
2/23 10/16 3 M,J/K
2/18 10/23 3 M
7/25 24/20 3 I
19/28§* 8/4 3 -
5/17 13/1 2 I
9/28 11/4 2 G/H
3/14 14/21 1 -
5/28 13/4 1 G/H
6/32§ 12/22 1 L
16/17§ 18/1 1 D
17/31 1/28 1 D
22/23§* 17/16 1 K
22/30 17/29 1 K
17/32 1/22 1 -
12/17 5/18 1 -
10/32 9/22 1 -
9/25 11/20 1 G/H,I
4/6 6/12 1 -
2/25 10/20 1 -
2/6 10/12 1 -
9/14 11/21 1 -
3/13/17 14/19/1 1 3&13 = M
1/6/32 2/12/22 1 1&6 = D
TOTAL - 112 -
  1. 112 Atlantic salmon reference genome contigs showed alignment to two or more linkage groups. The number of times two or more Atlantic salmon linkage groups shared an Atlantic salmon genome contig was counted, and is presented in column three. Column four shows the proto-Acinopterygian ancestral linkage group shared between Atlantic salmon linkage groups in column one, as defined by Danzmann et al. [6].
  2. § Also identified in [8]; *Also identified in [44].