Table 2 Differential transcription analysis overview
| Â | Perm-R | Imida-R | Propo-R | Any strains | ||||
|---|---|---|---|---|---|---|---|---|
| Â | Transcripts | % | Transcripts | % | Transcripts | % | Transcripts | % |
AC test P value | 2858 | 21.8 | 2942 | 22.5 | 1881 | 14.4 | 4188 | 32.0 |
AC test P value and FC >3 | 181 | 1.4 | 339 | 2.6 | 131 | 1.0 | 463 | 3.5 |
Over transcribed | 34 | 0.3 | 259 | 2.0 | 38 | 0.3 | 279 | 2.1 |
Known transcripts | 34 | 0.3 | 235 | 1.8 | 37 | 0.3 | 255 | 1.9 |
New putative transcripts | 0 | 0.0 | 24 | 0.2 | 1 | 0.0 | 24 | 0.2 |
Under transcribed | 147 | 1.1 | 80 | 0.6 | 93 | 0.7 | 239 | 1.8 |
Known transcripts | 131 | 1.0 | 70 | 0.5 | 76 | 0.6 | 210 | 1.6 |
New putative transcripts | 16 | 0.1 | 10 | 0.1 | 17 | 0.1 | 29 | 0.2 |