| |
Perm-R
|
Imida-R
|
Propo-R
|
|---|
| |
SNPs
|
%
|
SNPs
|
%
|
SNPs
|
%
|
|---|
|
Detected SNPs
|
143737
|
100
|
143645
|
100
|
133892
|
100
|
|
Differential SNPs
|
1315
|
0.9
|
811
|
0.6
|
812
|
0.6
|
|
Genic consequences*
|
1403
|
100
|
881
|
100
|
908
|
100
|
|
5′ UTR
|
32
|
2.3
|
28
|
3.2
|
25
|
2.8
|
|
Synonymous coding
|
715
|
51.0
|
442
|
50.2
|
453
|
49.9
|
|
Non-synonymous Coding
|
137
|
9.8
|
95
|
10.8
|
108
|
11.9
|
|
Intronic
|
66
|
4.7
|
45
|
5.1
|
54
|
5.9
|
|
3′ UTR
|
121
|
8.6
|
88
|
10.0
|
87
|
9.6
|
|
Intergenic
|
325
|
23.2
|
184
|
20.9
|
181
|
19.9
|
- *Consequences of allelic changes are only indicated for differential SNPs (i.e. alleles showing > 50% allelic frequency difference in any selected strain as compared to the susceptible strain). These consequences were computed based on genome annotation.
