Figure 8
The alignment of a read pair straddling the fusion point of a tandem duplication. This figure demonstrates that the alignment of the ith read pair straddling the fusion point of a tandem duplication of the region delimited by coordinates x0 and y0 should be everted (RF). Furthermore, the length of the ith fragment should be equal to the sum of the lengths of two segments, one delimited by y0 and e i and the other delimited by x0 and s i ?+?r – 1 as shown here.