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Table 1 Average run-time and memory consumption for compared methods

From: DB2: a probabilistic approach for accurate detection of tandem duplication breakpoints using paired-end reads

 

DB2

SVDetect

CNVer

Breakdancer

GASV

CREST

Run time (seconds)

142.55

368.26

168.95

180.56

403.58

1625.092

Peak memory Usage (kb)

8601184

5161536

4615120

144784

5309072

201024

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BMC Genomics

ISSN: 1471-2164

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