DB2: a probabilistic approach for accurate detection of tandem duplication breakpoints using paired-end reads

BMC Genomics

Table 3 Colo-829 tandem duplications identified by our method and PCR/Sanger -validated or previously reported (Hg 18) coordinates

Chromosome	Reported*/Sequencing validated start	Reported*/Sequencingvalidated end	Predicted start Bp	Predicted end Bp	Previously reported?*
1	222713226	222866743	222713222	222866796	Yes
7	104272303	104399536	104272363	104399571	Yes
7	114317959	114318185	114317896	114318193	No
16	80356160	80356702	80356082	80356669	No

*in the study that first sequenced this sample [27]. The two that were not previously reported are PCR (Figure 7) and Sanger Sequencing (Additional file 9: Figure S7) validated.

ISSN: 1471-2164