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Figure 6 | BMC Genomics

Figure 6

From: eRNA: a graphic user interface-based tool optimized for large data analysis from high-throughput RNA sequencing

Figure 6

Venn diagram of eRNA, miRspring and miRDeep2 on known miRNA precursors identification. Options of Bowtie1 used in eRNA: (A) -v 0 -m 1 -a - -best - -strata, (B) -v 1 -m 2 -a - -best - -strata, (C) -v 1 -m 5 -a - -best - -strata. Default options from Bowtie1 used in miRspring: -v 1 -a - -best - -strata. Default options from Bowtie1 used in miRdeep2: -v 1 -a - -best - -strata - -norc. -v: the maximum number of mismatches in the report alignments. -m: the maximum number of the suppressed alignments if a read has multiple reportable alignments. -a - -best - -strata: Bowtie reports only those alignments in the best stratum.

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