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Table 5 List of DEG transcripts abundant in sensitive genotypes

From: Identification of differentially expressed genes between sorghum genotypes with contrasting nitrogen stress tolerance by genome-wide transcriptional profiling

  

Log(FC) = log2(sensitive/tolerant genotype)

Gene annotation

Gene id

1/3

1/4

1/5

1/6

2/3

2/4

2/5

2/6

7/3

7/4

7/5

7/6

Flavanoids and stilbene biosynthesis

             

Chalcone and stilbene synthase

Sb07g004700

3.9

5.0

8.4

3.4

3.1

4.2

7.5

2.6

**

**

6.8

**

Choline monooxygenase

Sb10g028700

5.0

6.0

7.1

**

4.2

5.2

6.4

**

4.4

5.5

6.6

**

Polyamine oxidase 1, Flavin-containing domain

Sb07g005780

3.9

4.2

2.6

1.9

3.2

3.5

1.9

**

3.4

3.7

2.0

1.3

Leucoanthocyanidin dioxygenase

Sb06g014550

3.3

3.0

**

2.9

2.8

2.5

**

2.4

2.2

1.9

**

1.8

Anthocyanidin 5,3-O-glucosyltransferase

Sb09g026280

**

**

3.2

3.7

**

**

2.5

2.9

**

2.4

2.8

3.3

CYP71A25 cytochrome P450,

Sb07g000550

11.8

7.5

4.8

4.9

8.7

4.5

1.7

1.8

10.2

5.9

3.1

3.2

CYP87A2 cytochrome P450,

Sb05g004900

7.6

**

7.7

3.5

6.6

**

6.6

2.4

6.0

**

6.1

**

Glutathione S-transferase

Sb04g003850

9.3

9.2

7.0

**

9.6

9.5

7.3

1.9

9.1

9.1

6.8

**

Cell wall metabolism

             

Beta-1,3-glucanase

Sb08g019670

3.9

3.9

**

3.3

2.1

2.2

**

**

2.2

2.2

**

**

Beta-expansin

Sb10g028070

2.8

3.9

**

2.6

**

2.6

**

**

2.3

3.5

**

2.1

Peroxin 13

Sb02g003110

2.5

2.2

**

**

2.5

2.2

**

1.6

2.0

1.7

**

**

Peroxidase superfamily protein

Sb09g020980

9.8

**

**

4.0

8.4

**

**

2.6

8.5

**

**

2.6

Peroxidase superfamily protein

Sb09g021000

3.8

**

**

3.4

2.5

**

**

2.1

2.6

**

**

2.2

Alpha/beta-Hydrolases

Sb10g021250

10.1

10.0

**

3.5

8.8

8.7

**

2.2

9.0

8.9

**

2.4

Alpha/beta-Hydrolases

Sb1306s002010

7.2

7.9

**

3.8

6.3

7.0

**

2.9

6.0

6.7

**

2.6

Glycosyl hydrolases family 17

Sb08g019670

3.9

3.9

**

3.3

2.1

2.2

**

**

2.2

2.2

**

**

Chitinase A glycosyl hydrolase

Sb05g023710

2.7

**

**

1.9

2.3

**

**

1.5

2.3

**

**

1.5

Phytohormones

             

SAUR-like auxin-responsive protein

Sb06g001800

**

3.5

**

3.6

**

**

**

3.4

3.6

3.5

**

3.5

Auxin response factor 2 (ARF 2)

Sb06g011767

6.5

6.5

**

**

7.3

7.3

**

2.2

7.8

7.7

**

2.6

Auxin-induced protein 5NG4

Sb04g000450

3.8

5.5

**

8.0

3.2

4.8

**

7.3

**

**

**

**

Cytokinin-O-glucosyltransferase 2

Sb06g018490

12.4

7.5

**

2.9

12.4

7.6

**

2.9

12.1

7.2

**

2.5

Kinases

             

CRK55, Cystein rich RLK 55

Sb01g039360

**

2.2

2.1

**

**

1.3

1.2

**

2.0

2.3

2.2

**

PR5-like receptor kinase

Sb03g025630

**

4.1

3.5

**

**

3.7

3.0

**

**

4.7

4.0

**

Protein kinase superfamily protein

Sb01g041910

3.2

**

**

3.2

3.2

**

**

3.1

2.4

**

**

2.4

S-locus lectin protein kinase

Sb09g001750

**

**

5.9

**

2.9

3.6

7.3

**

**

2.3

5.9

**

PEP1 receptor-1 kinase

Sb07g021940

3.0

4.1

**

**

2.9

4.0

**

1.8

1.9

3.1

**

**

Transcription factors

             

MYB-like transcription factor

Sb09g030390

2.9

4.2

**

2.4

1.7

2.9

**

**

**

2.4

**

**

AP2/B3-like transcriptional factor

Sb01g014400

4.4

4.2

2.5

**

6.0

5.7

4.1

1.8

3.2

2.9

**

**

Auxin response factor 2

Sb06g011767

6.5

6.5

**

**

7.3

7.3

**

2.2

7.8

7.7

**

2.6

SAUR-like auxin-responsive protein

Sb06g001800

**

3.5

**

3.6

**

**

**

3.4

3.6

3.5

**

3.5

  1. The transcriptional abundance of DEGs from 12 pair-wise comparisons (1/3, 1/4, 1/5, 1/6, 2/3, 2/4, 2/5, 2/6, 7/3, 7/4, 7/5, and 7/6) made between three sensitive genotypes [CK60 (1), BTx623 (2) and the low-NUE bulk (7)] with each of the four with each of the four tolerant genotypes [San Chi San (3), China17 (4), KS78 (5) and the high-NUE bulk (6)] were summarized. **Not significant when FDR ≤ 0.001; Log(FC) is the log2 ratio of gene transcript between sensitive and tolerant genotypes; If Log(FC) >0, positive values indicate transcript is abundant in sensitive genotypes.