Table 3 Number and density of single nucleotide polymorphisms (SNPs) identified in the genome sequence from one outbred black grouse individual
| Â | Number of SNP | SNP density (%) | SNP type | |||||
|---|---|---|---|---|---|---|---|---|
Transition | Transversion | |||||||
A/G | C/T | A/C | A/T | C/G | G/T | |||
Total | 949254 | 0.114 | 320842 | 320314 | 79442 | 84824 | 60193 | 80439 |
Macro-chromosomes (1 ~ 5) | 601867 | 0.120 | 201789 | 201258 | 51505 | 56799 | 37937 | 52579 |
Intermediate-chromosomes (6 ~ 10) | 146269 | 0.117 | 49447 | 49574 | 12547 | 12736 | 9554 | 12411 |
Micro-chromosomes (11 ~ 28) | 161369 | 0.111 | 54160 | 53843 | 13324 | 12465 | 10918 | 13459 |
Chromosome Z | 39749 | 0.071 | 15446 | 15639 | 2066 | 2824 | 1784 | 1990 |