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Table 3 Number and density of single nucleotide polymorphisms (SNPs) identified in the genome sequence from one outbred black grouse individual

From: Whole genome sequencing of the black grouse (Tetrao tetrix): reference guided assembly suggests faster-Z and MHC evolution

  Number of SNP SNP density (%) SNP type
Transition Transversion
A/G C/T A/C A/T C/G G/T
Total 949254 0.114 320842 320314 79442 84824 60193 80439
Macro-chromosomes (1 ~ 5) 601867 0.120 201789 201258 51505 56799 37937 52579
Intermediate-chromosomes (6 ~ 10) 146269 0.117 49447 49574 12547 12736 9554 12411
Micro-chromosomes (11 ~ 28) 161369 0.111 54160 53843 13324 12465 10918 13459
Chromosome Z 39749 0.071 15446 15639 2066 2824 1784 1990