Mature miRNA ID1
|
miRBase Pre-miRNA2
|
miRBase miRNA3
|
5Score
|
Mature reads
|
Mature sequence
|
Size
|
Star reads
|
Star sequence4
|
Size
|
Precursor coordinate
|
---|
bta-miR-1842-5p
|
eca-mir-1842
|
eca-miR-1842
|
1180.4
|
2,172
|
uggcucugugaggucggcuca
|
21
|
142
|
agcaggccugucagggcguug
|
21
|
25:1744660..1744720:-
|
bta-miR-219-2-3p
|
ssc-mir-219
|
ssc-miR-219
|
68.9
|
103
|
agaguugagucuggacgucccg
|
22
|
20
|
ugauuguccaaacgcaauuc
|
20
|
23:7335349..7335412:-
|
bta-miR-664-3p
|
ssc-mir-664
|
ssc-miR-664-3p
|
68.5
|
70
|
uauucauuuaucucccagccuaca
|
24
|
59
|
caggcuaggagaaaugauuggau
|
23
|
16:24379875..24379936:-
|
bta-miR-6516-5p
|
gga-mir-6516
| |
9.6
|
10
|
uuugcaguaacaggugugaac
|
21
|
9
|
aucauguaugauacugcaaaca
|
22
|
19:55419754..55419817:+
|
bta-mir-2964a-3p
|
bta-mir-219-1′
|
hsa-miR-2964a-3p
|
20.7
|
27
|
agaauugcguuuggacaaucagu
|
23
|
5
|
gauguccagccacaauucucg
|
21
|
11:98997166..98997230:+
|
bta-miR-3548-3p
|
bta-mir-200a′
|
rno-miR-3548
|
6.6
|
2
|
cagcacuguccgguaagauguc
|
22
|
2
|
caucguuaccagacaguguuaga
|
23
|
16:52521338..52521399:+
|
bta-miR-194-1′-3p
|
bta-mir-194-1′
| |
30.4
|
56
|
acauggaguugcuguuacaaucg
|
23
|
3
|
aaguaacagcaucuccacugga
|
22
|
16:24306044..24306105:+
|
bta-miR-486′-5p
|
bta-mir-486′
| |
27.8
|
48
|
cccgguacugagcugacccgag
|
22
|
4
|
ucggggcagcucaguacaggac
|
22
|
27:36261849..36261912:+
|
bta-miR-374a′-5p
|
bta-mir-374a′
|
bta-miR-374a-3p
|
26.1
|
50
|
uuacaauacaaccugauaagug
|
22
|
1
|
acuuaucagguuguauuaua
|
20
|
X:81951234..81951283:-
|
bta-miR-763′-3p
|
bta-mir-763′
| |
6.8
|
8
|
ucccagcuggucauuaauccu
|
21
|
3
|
gaauuaauggcuggcugggagg
|
22
|
5:48164035..48164101:+
|
bta-miR-191′-5p
|
bta-mir-191′
|
bta-miR-191
|
5.5
|
40
|
gaacgaaauccaagcgcagcug
|
22
|
0
|
gcugcuuuugggauuccguugcc
|
23
|
22:51543481..51543545:-
|
bta-miR-1388′-3p
|
bta-mir-1388′
|
bta-miR-1388-5p
|
1.8
|
405
|
uucucagguuggacaguccuga
|
22
|
0
|
cgggcugacaaaccugagauug
|
22
|
13:54375941..54376002:-
|
bta-miR-374b′-5p
|
bta-mir-374b′
|
bta-miR-374-3p
|
1.4
|
60
|
ugauaauacaaccugauaagug
|
22
|
0
|
cuuagcagguuguauuauaucc
|
22
|
X:82023929..82023981:-
|
bta-miR-194-2′-3p
|
bta-mir-194-2′
|
bta-miR-194
|
4.8
|
10
|
cacauggaguugcuguuaca
|
20
|
0
|
uaacagcagccccacugga
|
19
|
29:43731473..43731526:-
|
bta-miR-590-3p
|
eca-mir-590
| |
1.4
|
13
|
uaguuuuauguguaagcucguu
|
22
|
0
|
cgagcuuauucacagaaguaca
|
22
|
25:33713356..33713419:-
|
bta-miR-222b-3p
| |
bta-miR-222
|
4.9
|
20
|
ugcuacaucuggcuacugga
|
20
|
0
|
ggguggacgcuguguggcugagc
|
23
|
10:78769129..78769183:+
|
- 1“`”represents the antisense of miRNA precursor; the star sequence of miR-219-2 is miR-219-5p in miRBase (Release 19);
- 2The top known miRNA precursor (miRBase Release 19) aligns to novel precursor with > 70 identity and > 75 sequence length;
- 3The top known miRNA (miRBase Release 19) matches novel miRNA covering > 90 identity and > 90 sequence length;
- 4Sequence here only shows the dominant one and the star sequence that was absent was predicted by miRDeep2.
- 5miRNA with score less than 5 is identified from miRNA candidate precursor.