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Table 1 Enrichment of gene ontology terms in differentially expressed sequences in P. bursaria detected by PAGE

From: Comparison of gene expression of Paramecium bursaria with and without Chlorella variabilissymbionts

GO_name GO_id Number of sequences Zscore P-value False discovery rate
BP oxidation–reduction process GO:0055114 135 -6.992 2.71E-12 3.28E-10
MF oxidoreductase activity GO:0016491 92 -6.879 6.04E-12 3.65E-10
BP metabolic process GO:0008152 104 -5.659 1.52E-08 6.15E-07
BP carbohydrate metabolic process GO:0005975 33 -4.656 3.23E-06 9.76E-05
CC integral to membrane GO:0016021 196 -4.399 1.09E-05 0.0003
BP translation GO:0006412 56 -4.187 2.83E-05 0.0006
MF structural constituent of ribosome GO:0003735 57 -4.153 3.29E-05 0.0006
CC ribosome GO:0005840 54 -4.044 5.25E-05 0.0008
MF pyridoxal phosphate binding GO:0030170 13 -4.015 5.96E-05 0.0008
MF phosphorelay response regulator activity GO:0000156 40 3.310 0.0009 0.0102
BP phosphorelay signal transduction system GO:0000160 40 3.310 0.0009 0.0102
BP ATP hydrolysis coupled proton transport GO:0015991 16 -3.239 0.0012 0.0121
MF chromatin binding GO:0003682 21 3.107 0.0019 0.0176
BP DNA replication GO:0006260 18 3.008 0.0026 0.0227
CC intracellular GO:0005622 95 -2.953 0.0031 0.0254
MF phosphorelay sensor kinase activity GO:0000155 26 2.901 0.0037 0.0281
BP biosynthetic process GO:0009058 16 -2.798 0.0051 0.0366
  1. Notes: GO, gene ontology; PAGE, parametric analysis of gene set enrichment; BP, biological process; MF, molecular function; and CC, cellular component. We used log2 Fold Change values between symbiont-bearing and symbiont-free cells to calculate Z scores and corresponding P-values for each GO term.