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Table 4 Coverage correlation

From: Target enrichment using parallel nanoliter quantitative PCR amplification

 

PC3

MCF7GhentB

ACHN

786-O

Normal1-singleton-B

OVCAR-5

MDA-MB-231

DU-145

IGROV-1

SN12C

Normal1-duplicate-A

HT-29

HCT116

MOLT-4

HCT-15

Normal2-singleton-B

CCRF-CEM

Normal1-singleton-A

BT-549

MCF7

Normal2-singleton-A

RPMI-8226

MCF7GhentB

0.884

                     

ACHN

0.872

0.910

                    

786-O

0.844

0.864

0.865

                   

Normal1-singleton-B

0.843

0.901

0.932

0.870

                  

OVCAR-5

0.798

0.799

0.825

0.904

0.804

                 

MDA-MB-231

0.846

0.861

0.864

0.965

0.861

0.936

                

DU-145

0.877

0.909

0.919

0.928

0.920

0.887

0.940

               

IGROV-1

0.926

0.905

0.900

0.892

0.887

0.798

0.865

0.910

              

SN12C

0.882

0.901

0.914

0.910

0.902

0.928

0.935

0.953

0.894

             

Normal1-duplicate-A

0.840

0.945

0.902

0.885

0.915

0.794

0.863

0.916

0.890

0.886

            

HT-29

0.851

0.888

0.939

0.832

0.924

0.812

0.855

0.890

0.869

0.896

0.868

           

HCT116

0.946

0.911

0.907

0.887

0.880

0.816

0.875

0.911

0.975

0.906

0.881

0.877

          

MOLT-4

0.858

0.904

0.900

0.938

0.919

0.853

0.928

0.965

0.917

0.933

0.933

0.864

0.910

         

HCT-15

0.833

0.852

0.867

0.969

0.858

0.927

0.975

0.938

0.870

0.919

0.868

0.838

0.872

0.931

        

Normal2-singleton-B

0.842

0.883

0.931

0.832

0.915

0.836

0.854

0.903

0.856

0.906

0.869

0.933

0.867

0.875

0.844

       

CCRF-CEM

0.959

0.907

0.909

0.870

0.876

0.817

0.865

0.907

0.948

0.902

0.868

0.880

0.960

0.891

0.863

0.881

      

Normal1-singleton-A

0.832

0.897

0.932

0.864

0.950

0.805

0.859

0.908

0.883

0.901

0.910

0.925

0.879

0.919

0.855

0.913

0.871

     

BT-549

0.859

0.887

0.903

0.900

0.894

0.933

0.928

0.950

0.867

0.963

0.881

0.891

0.883

0.917

0.913

0.912

0.889

0.889

    

MCF7

0.840

0.878

0.945

0.827

0.918

0.857

0.855

0.896

0.846

0.919

0.863

0.948

0.865

0.861

0.836

0.942

0.871

0.922

0.928

   

Normal2-singleton-A

0.861

0.908

0.957

0.855

0.944

0.826

0.865

0.923

0.885

0.913

0.901

0.941

0.892

0.899

0.862

0.946

0.898

0.936

0.913

0.946

  

RPMI-8226

0.855

0.876

0.945

0.824

0.912

0.838

0.853

0.893

0.846

0.899

0.858

0.950

0.870

0.852

0.839

0.945

0.882

0.910

0.915

0.966

0.956

 

Normal1-duplicate-B

0.860

0.951

0.917

0.884

0.918

0.829

0.879

0.931

0.889

0.914

0.973

0.893

0.890

0.924

0.880

0.900

0.890

0.914

0.910

0.897

0.922

0.889

Mean

0.892

                     

Stdev

0.038

                     
  1. Spearman rank correlation of the per base coverage in between all pairs of individual captures reactions.