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Table 4 Coverage correlation

From: Target enrichment using parallel nanoliter quantitative PCR amplification

  PC3 MCF7GhentB ACHN 786-O Normal1-singleton-B OVCAR-5 MDA-MB-231 DU-145 IGROV-1 SN12C Normal1-duplicate-A HT-29 HCT116 MOLT-4 HCT-15 Normal2-singleton-B CCRF-CEM Normal1-singleton-A BT-549 MCF7 Normal2-singleton-A RPMI-8226
MCF7GhentB 0.884                      
ACHN 0.872 0.910                     
786-O 0.844 0.864 0.865                    
Normal1-singleton-B 0.843 0.901 0.932 0.870                   
OVCAR-5 0.798 0.799 0.825 0.904 0.804                  
MDA-MB-231 0.846 0.861 0.864 0.965 0.861 0.936                 
DU-145 0.877 0.909 0.919 0.928 0.920 0.887 0.940                
IGROV-1 0.926 0.905 0.900 0.892 0.887 0.798 0.865 0.910               
SN12C 0.882 0.901 0.914 0.910 0.902 0.928 0.935 0.953 0.894              
Normal1-duplicate-A 0.840 0.945 0.902 0.885 0.915 0.794 0.863 0.916 0.890 0.886             
HT-29 0.851 0.888 0.939 0.832 0.924 0.812 0.855 0.890 0.869 0.896 0.868            
HCT116 0.946 0.911 0.907 0.887 0.880 0.816 0.875 0.911 0.975 0.906 0.881 0.877           
MOLT-4 0.858 0.904 0.900 0.938 0.919 0.853 0.928 0.965 0.917 0.933 0.933 0.864 0.910          
HCT-15 0.833 0.852 0.867 0.969 0.858 0.927 0.975 0.938 0.870 0.919 0.868 0.838 0.872 0.931         
Normal2-singleton-B 0.842 0.883 0.931 0.832 0.915 0.836 0.854 0.903 0.856 0.906 0.869 0.933 0.867 0.875 0.844        
CCRF-CEM 0.959 0.907 0.909 0.870 0.876 0.817 0.865 0.907 0.948 0.902 0.868 0.880 0.960 0.891 0.863 0.881       
Normal1-singleton-A 0.832 0.897 0.932 0.864 0.950 0.805 0.859 0.908 0.883 0.901 0.910 0.925 0.879 0.919 0.855 0.913 0.871      
BT-549 0.859 0.887 0.903 0.900 0.894 0.933 0.928 0.950 0.867 0.963 0.881 0.891 0.883 0.917 0.913 0.912 0.889 0.889     
MCF7 0.840 0.878 0.945 0.827 0.918 0.857 0.855 0.896 0.846 0.919 0.863 0.948 0.865 0.861 0.836 0.942 0.871 0.922 0.928    
Normal2-singleton-A 0.861 0.908 0.957 0.855 0.944 0.826 0.865 0.923 0.885 0.913 0.901 0.941 0.892 0.899 0.862 0.946 0.898 0.936 0.913 0.946   
RPMI-8226 0.855 0.876 0.945 0.824 0.912 0.838 0.853 0.893 0.846 0.899 0.858 0.950 0.870 0.852 0.839 0.945 0.882 0.910 0.915 0.966 0.956  
Normal1-duplicate-B 0.860 0.951 0.917 0.884 0.918 0.829 0.879 0.931 0.889 0.914 0.973 0.893 0.890 0.924 0.880 0.900 0.890 0.914 0.910 0.897 0.922 0.889
Mean 0.892                      
Stdev 0.038                      
  1. Spearman rank correlation of the per base coverage in between all pairs of individual captures reactions.