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Table 7 SNP detection in technical replicates

From: Target enrichment using parallel nanoliter quantitative PCR amplification

Sample Capture reaction PCR replicates Total variants Total variants (union) Variants in comon in between all replicates (intersect) Genotype concordant Genotype discordant
Normal1 DNA Duplicate-A 2 145 168 (15 indles) 120 (10 indels) 118 (10 indels) 2
  Duplicate-B 2 133     
  Singelton-A 1 141     
  Singleton-B 1 143     
MCF7 Duplicate-A 2 76 86 (16 indels) 72 (10 indels) 69 (10 indels) 3
  Duplicate-B 2 77     
  Singelton 1 84     
Normal2 DNA Singelton-A 1 134 149 (14 indels) 121 (11 indels) 119 (11 indels) 2
  Singleton-B 1 133     
  1. The number of consistently and inconsistently called SNP positions across the technical replicates included in this experiment.