Table 4 Single and multiple k-mer length meta assembly across 4 species
Assembly | Base-pairs | n | Median | Mean | n50 | % reads used |
|---|---|---|---|---|---|---|
I. tridecemlineatus | Â | Â | Â | Â | Â | Â |
25-mer assembly | 25446725 | 33363 | 460 | 762 | 1328 | 49.97% |
Meta assembly | 52328097 | 50869 | 608 | 1028 | 1708 | 70.26% |
S. vulgaris | Â | Â | Â | Â | Â | Â |
25-mer assembly | 21706584 | 34262 | 404 | 633 | 1124 | 66.31% |
Meta assembly | 40068740 | 43475 | 815 | 921 | 1351 | 85.45% |
O. fasciatus | Â | Â | Â | Â | Â | Â |
25-mer assembly | 9487925 | 15886 | 421 | 597 | 894 | 69.12% |
Meta assembly | 18283749 | 18106 | 797 | 1009 | 1312 | 81.80% |
T. biloba | Â | Â | Â | Â | Â | Â |
25-mer assembly | 20431185 | 22423 | 549 | 911 | 1571 | 58.87% |
Meta assembly | 32887248 | 24495 | 887 | 1342 | 2010 | 64.01% |