| |
All synolog pairs
|
≥90% protein sequence identity between synolog pairs
|
|---|
| |
Median ± MAD
|
Min
|
Max
|
Median ± MAD
|
Min
|
Max
|
|---|
|
Number of carbohydrate metabolism synologs
|
49.0 ± 35.0
|
0
|
394
|
0.0 ± 0.0
|
0
|
47
|
|
Number of carbohydrate metabolism synolog groups
|
20.0 ± 13.0
|
0
|
128
|
0.0 ± 0.0
|
0
|
16
|
|
Average protein sequence identity between synolog pairs2 [%]
|
36.8 ± 4.2
|
13.4
|
100.0
|
97.3 ± 1.8
|
90.0
|
100.0
|
|
Synolog fraction of carbohydrate metabolism genes [%]
|
30.0 ± 9.7
|
0.0
|
85.7
|
0.0 ± 0.0
|
0.0
|
34.6
|
- 1Median, minimum and maximum values for the carbohydrate metabolism gene set extracted from 943 prokaryote genomes in the SEED database [19], with no set cutoff and with a cutoff set at 90% protein sequence identity between synologs. Synologs are here defined as intra-genome sequences assigned to the same FIGfam (see text). The synolog fraction describes the ratio of the total number of synologs relative to the total number of genes in a genome. MAD is median absolute deviation. The median number of carbohydrate metabolism genes in the data set was 160.0 ± 74.0. The minimum and maximum numbers of carbohydrate metabolism genes observed among the included genomes were 4 and 585 genes, respectively.
- 2Calculated from the genomes containing carbohydrate metabolism synologs at the given cutoff.
