Skip to main content

Table 2 Divergent haplotype blocks between LH and LN strains identified by OSD analysis and SNP genotyping data

From: Genomic structure of nucleotide diversity among Lyon rat models of metabolic syndrome

  Haplotype blocks OSD analysis Haplotype blocks STAR genotyping
Block number Start (mb) End (mb) Length (mb) Start (mb) End (mb)
1 29.7 30.0 0.3 29.7 30.2
2 30.1 30.3 0.2
3 30.7 30.9 0.2 novel
4 39.4 39.6 0.2 38.2 39.8
5 41.7 43.1 1.4 42.2 43.2
6 43.2 43.4 0.2
7 53.4 53.8 0.4 novel
8 62.2 63.2 1.0 62.3 65.8
9 63.4 64.9 1.5
10 65 65.9 0.9
11 69.7 69.9 0.2 69.7 70.8
12 70.4 70.8 0.4
13 83.6 83.9 0.3 novel
14 90.8 91.1 0.3 90.8 90.9
  1. All genome position coordinates are based on the rn4 assembly.