Motif number | Related function | ID/IUPAC | Motif sequence | Organism described | Sequence in DM | Position | Strand | Polymorphism for disrupted motifsa | |
---|---|---|---|---|---|---|---|---|---|
Start | End | ||||||||
 |  |  |  |  |  | Start | End |  |  |
1 | Disease responsive | BIHD1OS | TGTCA | Oryza sativa | TGTCA | -1024 | -1028 | - | CKSV |
TGTCA | -878 | -874 | + | ||||||
TGTCA | -873 | -869 | + | ||||||
TGTCA | -385 | -389 | - | ||||||
TGTCA | -110 | -106 | + | ||||||
2 | Pathogen- and salt- induced expression (GT-1 motif) | GT1GMSCAM4 | GAAAAA | Glycine max | GAAAAA | -1678 | -1673 | + | Â |
GAAAAA | -1069 | -1064 | + | ||||||
GAAAAA | -918 | -923 | - | ||||||
GAAAAA | -826 | -821 | + | C# | |||||
GAAAAA | -706 | -701 | + | S#V# | |||||
GAAAAA | -505 | -500 | + | C#SV | |||||
3 | Light regulated (I box/I-box) | IBOXCORE | GATAA | Angiosperms | GATAA | -1834 | -1838 | - | Â |
GATAA | -1545 | -1541 | + | CKSV | |||||
GATAA | -1483 | -1487 | - | S#V# | |||||
GATAA | -1463 | -1459 | + | CKSV | |||||
GATAA | -1242 | -1238 | + | C | |||||
GATAA | -1121 | -1117 | + | Â | |||||
GATAA | -1109 | -1105 | + | ||||||
GATAA | -834 | -830 | + | ||||||
GATAA | -537 | -541 | - | ||||||
GATAA | -235 | -239 | - | CKSV | |||||
GATAA | -117 | -121 | - | K# | |||||
4 | Dehydration response (MYB recognition site) | MYB1AT | WAACCA | Arabidopsis thaliana | AAACCA | -1927 | -1922 | + | V# |
AAACCA | -703 | -698 | + | S#V# | |||||
TAACCA | -173 | -168 | + | Â | |||||
AAACCA | -15 | -10 | + | ||||||
5 | Transcriptional activator (core motif of MybSt1, a potato MYB homolog binding site) | MYBST1 | GGATA | Solanum tuberosum | GGATA | -1556 | -1552 | + | CKSV |
GGATA | -1299 | -1303 | - | Â | |||||
GGATA | -1122 | -1118 | + | ||||||
GGATA | -835 | -831 | + | ||||||
GGATA | -116 | -120 | - | K# | |||||
6 | Rosette leaf- and root-specific | RAV1AAT | CAACA | Arabidopsis thaliana | CAACA | -1834 | -1830 | + | Â |
CAACA | -1320 | -1316 | + | ||||||
CAACA | -1242 | -1246 | - | ||||||
CAACA | -981 | -977 | + | ||||||
CAACA | -339 | -335 | + | ||||||
CAACA | -281 | -285 | - | ||||||
CAACA | -169 | -165 | + | ||||||
7 | Axillary bud-specific (sugar-repressive element) | SREATMSD | TTATCC | Arabidopsis thaliana | TTATCC | -1117 | -1122 | - | Â |
TTATCC | -830 | -835 | - | ||||||
TTATCC | -121 | -116 | + | K# | |||||
8 | Root apical meristem-specific | WUSATAg | TTAATGG | Oryza sativa | TTAATGG | -15 | -21 | - | Â |