Transcriptome profiling of the cold response and signaling pathways in Lilium lancifolium

BMC Genomics

Table 3 Categorization of Lilium lancifolium unigenes to KEGG biochemical pathways

KEGG categories	Mapped-ko	Unigene-NUM	Ratio of no.	Pathway-ID
Metabolic pathways	734	1784	11.23	ko01100
Biosynthesis of secondary metabolites	327	946	5.95	ko01110
Microbial metabolism in diverse environments	125	400	2.51	ko01120
mRNA surveillance pathway	48	256	1.61	ko03015
Ribosome	105	251	1.57	ko03010
Pyrimidine metabolism	63	250	1.57	ko00240
Biosynthesis of amino acids	95	237	1.49	ko01230
Cell cycle	50	233	1.46	ko04110
Carbon metabolism	71	229	1.44	ko01200
Splice some	87	223	1.40	ko03040
Protein processing in endoplasmic reticulum	71	208	1.31	ko04141
RNA transport	90	198	1.24	ko03013
Starch and sucrose metabolism	33	186	1.16	ko00500
Purine metabolism	77	169	1.06	ko00230
Plant-pathogen interaction	27	163	1.02	ko04626
Plant hormone signal transduction	38	158	0.97	ko04075
Epstein-barr virus infection	55	151	0.94	ko05169
Oxidative phosphorylation	70	150	0.94	ko00190
Homologous recombination	23	147	0.92	ko03440
RNA degradation	45	131	0.82	ko03018
Ubiquitin mediated proteolysis	55	128	0.81	ko04120
Glycolysis/Gluconeogenesis	30	128	0.81	ko00010
Endocytosis	38	127	0.79	ko04144
Amino sugar and nucleotide sugar metabolism	37	127	0.79	ko00520
Basal transcription factors	27	117	0.74	ko03022
Phenylpropanoid biosynthesis	16	109	0.68	ko00940
Ribosome biogenesis in eukaryotes	51	107	0.67	ko03008
Oocyte meiosis	29	106	0.66	ko04114
Viral carcinogenesis	38	104	0.66	ko05203
Cell cycle-yeast	47	102	0.64	ko04111
Insulin signaling pathway	19	102	0.64	ko04910
HTLV-I infection	40	101	0.63	ko05166
Fatty acid metabolism	10	100	0.62	ko00071
Pyruvate metabolism	28	96	0.60	ko00620
Others		7874	11.22

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