Table 3 Highly divergent genes on the Nannochloropsis organellar genomes
Gene* | (Putative) function | Closest homolog | Query length | Subject length | Alignment length | Identity# | E-value |
|---|---|---|---|---|---|---|---|
Nsk00019 | rps6; 30S ribosomal protein S6 | 30S ribosomal protein S6 [Thalassiosira pseudonana];|YP_874616.1| | 106 | 103 | 96 | 36.5 | 2.00E-11 |
Nsk00027 | atpD; Atp synthase delta subunit | Hypothetical protein MldDRAFT_4321 [delta proteobacterium MLMS-1]; |ZP_01290127.1| | 232 | 331 | 162 | 24.7 | 0.02 |
Nsk00028 | atpF; ATP synthase b subunit | CF0 subunit I of ATP synthase [Oltmannsiellopsis viridis]; |YP_635887.1| | 155 | 183 | 106 | 33 | 5.00E-06 |
Nsk00029 | atpG; ATP synthase b’ subunit | ATP synthase CF0 subunit II [Vaucheria litorea];|YP_002327468.1| | 160 | 154 | 145 | 29.7 | 7.00E-11 |
Nsk00053 | Hypothetical; putative peroxidase | Hypothetical protein tlr1577 [Thermosynechococcus elongatus BP-1];|NP_682367.1| | 195 | 99 | 54 | 35.2 | 0.072 |
Nsk00055 | psb28; photosystem II protein (ycf79) | Photosystem II protein W [Guillardia theta]; |NP_050669.1| | 113 | 116 | 94 | 30.9 | 2.00E-04 |
Nsk00062 | ycf4; photosystem I assembly protein | Photosystem I assembly protein Ycf4 [Coccomyxa subellipsoidea C-169]; |YP_004222004.1| | 195 | 189 | 155 | 29 | 4.00E-12 |
Nsk00063 | ycf49; DUF2499 | Unknown DUF2499 [Picea sitchensis]; |ABK25760.1| | 97 | 216 | 88 | 35.2 | 5.00E-11 |
Nsk00087 | Unknown; ORFan | Hypothetical protein SPPN_02855 [Streptococcus pseudopneumoniae IS7493 | 117 | 282 | 85 | 25.9 | 0.81 |
Nsk00113 | rpoA; RNA polymerase alpha chain | RNA polymerase alpha subunit [Cryptomonas paramecium]; |YP_003359271.1| | 447 | 310 | 195 | 34.9 | 4.00E-14 |
Nsk00135 | ycf34 | Chloroplast protein Ycf34 [Gloeobacter violaceus PCC 7421]; |NP_927340.1| | 86 | 80 | 81 | 28.4 | 0.27 |
Nsk00142 | clpN | ATP-dependent Clp protease ATP-binding subunit ClpA [Desulfobulbus propionicus DSM 2032; |YP_004196194.1| | 149 | 756 | 96 | 29.2 | 2.4 |
Nsk00202 | Unknown; ORFan | Predicted protein with ABC transporter signatures [Fibroporia radiculosa]; |CCM01526.1| | 93 | 613 | 54 | 38.9 | 1.3 |
Nsk00204 | Unknown; ORFan | Hyp. periplasmic binding protein MARHY3762 [Marinobacter hydrocarbonoclasticus ATCC 49840]; |YP_005431639.1| | 119 | 404 | 50 | 46 | 1.9 |
Nsk00206 | Unknown; ORFan | Coiled-coil domain-containing protein 141 [Nomascus leucogenys]; |XP_003253834.1| | 99 | 1530 | 59 | 37.3 | 5.5 |
Nsk00212 | rps10; 30S ribosomal protein S10 | 30S ribosomal protein S10 [Spirochaeta smaragdinae DSM 11293]; |YP_003802682.1| | 112 | 102 | 84 | 36.9 | 5.00E-05 |
Nsk00213 | rps11; 30S ribosomal protein S11 | 30S ribosomal protein S11, partial [uncultured bacterium]; |EKD46317.1| | 156 | 140 | 110 | 39.1 | 2.00E-18 |
Nsk00217 | rps2; 30S ribosomal protein S2 | Hypothetical protein [Batrachochytrium dendrobatidis JAM81];|EGF78568.1| | 212 | 195 | 169 | 29 | 5.00E-16 |
Nsk00218 | rps4: 30S ribosomal protein S4 | Ribosomal protein S4 [Synedra acus]; |YP_003359457.1| | 241 | 246 | 176 | 33.5 | 4.00E-09 |
Nsk00219 | Unknown; ORFan | Hypothetical protein [Trichomonas vaginalis G3]; |XP_001579587.1| | 323 | 744 | 118 | 28 | 1.8 |
Nsk00222 | rpl5; 50S ribosomal protein L5 | Ribosomal protein L5 [Thalassiosira pseudonana]; |YP_316605.1| | 179 | 178 | 176 | 34.7 | 8.00E-19 |
Nsk00231 | atp8; ATP synthase F0 subunit 8 | ATP synthase F0 subunit 8 [Fucus vesiculosus; |YP_448633.1| | 105 | 53 | 60 | 51.7 | 2.00E-07 |
Nsk00232 | Unknown; ORFan | fmhA protein [Staphylococcus saprophyticus ATCC 15305]; |YP_300577.1| | 231 | 410 | 156 | 23.08 | 6.7 |
Nsk00235 | rps13; 30S ribosomal protein S13 | NADH dehydrogenase s9- S13 fusion protein [endosymbiont of Durinskia baltica] |gb|AEP20701.1| | 118 | 310 | 117 | 41.9 | 8.00E-18 |
Nsk00013, Nsk0014, Nsk00150, Nsk00085, Nsk00203, Nsk00223 | Unknown; ORFans | No homologs | - | - | - | - | - |