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Table 2 List of the top 25 significantly up-regulated genes in the high γ-decalactone pool compared to the No γ-decalactone pool

From: Deciphering gamma-decalactone biosynthesis in strawberry fruit using a combination of genetic mapping, RNA-Seq and eQTL analyses

Gene

Locus position

Predicted function

FPKM H γ-DEC

FPKM N γ-DEC

log2 fold change

Test statistic

p-value

q-value

gene24970-v1.0-hybrid

LG1:16175288-16176946

Cinnamyl alcohol dehydrogenase-like

3.79

0.00

-1.8E + 308

-1.8E + 308

3.78E-15

2.06E-12

gene22145-v1.0-hybrid

LG4:24174473-24176874

Aldo keto reductase

1.98

0.06

-5.16

3.44

0.000573

0.021971

gene24414-v1.0-hybrid

LG3:31112417-31114643

Microsomal delta-12 oleate desaturase

325.92

11.41

-4.84

33.60

0

0

gene17831-v1.0-hybrid

LG1:12556715-12561321

Isoflavone 2 -hydroxylase-like

26.20

1.52

-4.10

13.80

0

0

gene11616-v1.0-hybrid

unanchored

---NA---

1.07

0.10

-3.49

6.49

8.34E-11

2.37E-08

gene12565-v1.0-hybrid

LG7:19409089-19409688

S-norcoclaurine synthase-like

8.52

1.00

-3.09

6.15

7.56E-10

1.61E-07

gene09812-v1.0-hybrid

LG6:9651860-9658187

Thaumatin-like protein

9.64

1.18

-3.03

8.53

0

0

gene29430-v1.0-hybrid

unanchored

Salicylic acid-binding protein 2-like

4.75

0.60

-2.98

4.62

3.92E-06

0.000362

gene09059-v1.0-hybrid

LG2:20948366-20950293

Hypothetical protein

1.10

0.14

-2.98

3.89

0.000102

0.005647

gene12485-v1.0-hybrid

LG1:6048496-6049132

Auxin-binding protein abp19a-like

2.15

0.28

-2.96

3.50

0.000468

0.018845

gene09427-v1.0-hybrid

LG5:10292998-10293780

Probable glutathione s-transferase-like

94.21

13.04

-2.85

17.49

0

0

gene16882-v1.0-hybrid

LG4:17649473-17650304

Probable glutathione s-transferase-like

5.13

0.76

-2.75

5.74

9.30E-09

1.60E-06

gene05671-v1.0-hybrid

LG6:28779898-28789864

Beta-glucanase

9.32

1.45

-2.69

10.13

0

0

-

LG6:25256895-25257433

Hypothetical protein

2.32

0.37

-2.67

3.24

0.001216

0.038671

gene08424-v1.0-hybrid

unanchored

Pathogenesis-related protein 4

7.04

1.15

-2.61

6.47

1.01E-10

2.79E-08

-

LG7:2164010-2164526

---NA---

4.04

0.67

-2.60

4.09

4.29E-05

0.002708

-

unanchored

---NA---

77.57

13.29

-2.55

3.37

0.000739

0.026493

gene13265-v1.0-hybrid

LG7:21691207-21692009

Par-1a protein

3.39

0.59

-2.53

4.10

4.17E-05

0.002653

-

LG4:2760209-2761669

Inhibitor of trypsin and hageman factor

4.34

0.76

-2.51

3.41

0.000656

0.024349

gene28799-v1.0-hybrid

LG3:9340369-9341925

Nectarin-3-like

2.84

0.52

-2.45

4.74

2.12E-06

0.000217

gene32603-v1.0-hybrid

LG4:2356895-2357929

Sieve element-occluding protein

1.82

0.34

-2.40

3.48

0.000503

0.019820

gene02395-v1.0-hybrid

LG3:5514062-5518181

Cytochrome p450

106.92

20.98

-2.35

19.15

0

0

gene21028-v1.0-hybrid

LG7:17655017-17664058

Psbp domain-containing protein chlorop-like

1.80

0.36

-2.33

4.37

1.24E-05

0.000952

gene17832-v1.0-hybrid

LG1:12556715-12561321

Hypothetical protein

19.76

4.11

-2.26

5.07

3.9E-07

4.78E-05

-

LG3:10391258-10391650

---NA---

14.68

3.06

-2.26

3.78

0.000156

0.007817

  1. Gene number according to the Fragaria vesca genome draft (http://www.Strawberrygenome.org). For a number of transcripts detected by cufflinks (-), no reference transcript was predicted in the Fragaria vesca gene model.