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Table 1 C. japonica transcriptome sequencing and assembly summary

From: Transcriptome sequencing and profiling of expressed genes in cambial zone and differentiating xylem of Japanese cedar (Cryptomeria japonica)

 

Sequence

Bases (Mbp)

Sequencing

  

Raw sequencing reads

308,542

125.1

Average read length

405.29 bp

 

Assembly

  

Trashed

9764

 

Reads used in assembly

298,778

121.2

Average read length

405.69 bp

 

Contigs

  

All contigs

  

Reads assembled as contigs

241,696

98.6

Number of contigs (over 100 bp)

15,521

12.7

large contigs (over 500 bp)

  

Number of contigs

11,022

11.2

Average contigs size

1,014

 

Largest contigs length

9,656

 

N50 contig size

1,102

 

Isotigs

  

Number of isotigs

14,616

15.6

Average isotigs size

1,069

 

Largest isotigs length

9,656

 

N50 isotig size

1,261

 

Avrage contig count

1.7

 

Singletons

40,435

 

Unique sequences

55,051

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