| Sequence | Bases (Mbp) |
---|---|---|
Sequencing | Â | Â |
Raw sequencing reads | 308,542 | 125.1 |
Average read length | 405.29Â bp | Â |
Assembly | Â | Â |
Trashed | 9764 | Â |
Reads used in assembly | 298,778 | 121.2 |
Average read length | 405.69Â bp | Â |
Contigs | Â | Â |
All contigs | Â | Â |
Reads assembled as contigs | 241,696 | 98.6 |
Number of contigs (over 100Â bp) | 15,521 | 12.7 |
large contigs (over 500Â bp) | Â | Â |
Number of contigs | 11,022 | 11.2 |
Average contigs size | 1,014 | Â |
Largest contigs length | 9,656 | Â |
N50 contig size | 1,102 | Â |
Isotigs | Â | Â |
Number of isotigs | 14,616 | 15.6 |
Average isotigs size | 1,069 | Â |
Largest isotigs length | 9,656 | Â |
N50 isotig size | 1,261 | Â |
Avrage contig count | 1.7 | Â |
Singletons | 40,435 | Â |
Unique sequences | 55,051 | Â |