Skip to main content

Advertisement

Table 1 C. japonica transcriptome sequencing and assembly summary

From: Transcriptome sequencing and profiling of expressed genes in cambial zone and differentiating xylem of Japanese cedar (Cryptomeria japonica)

  Sequence Bases (Mbp)
Sequencing   
Raw sequencing reads 308,542 125.1
Average read length 405.29 bp  
Assembly   
Trashed 9764  
Reads used in assembly 298,778 121.2
Average read length 405.69 bp  
Contigs   
All contigs   
Reads assembled as contigs 241,696 98.6
Number of contigs (over 100 bp) 15,521 12.7
large contigs (over 500 bp)   
Number of contigs 11,022 11.2
Average contigs size 1,014  
Largest contigs length 9,656  
N50 contig size 1,102  
Isotigs   
Number of isotigs 14,616 15.6
Average isotigs size 1,069  
Largest isotigs length 9,656  
N50 isotig size 1,261  
Avrage contig count 1.7  
Singletons 40,435  
Unique sequences 55,051