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Table 2 Occurrence of the 20 most common Pfam domains in the predicted proteins of unique transcripts from cambium and differentiating xylem of C. japonica

From: Transcriptome sequencing and profiling of expressed genes in cambial zone and differentiating xylem of Japanese cedar (Cryptomeria japonica)

Description of Pfam domain

Number of C. japonica transcriptsa

Pfam accession

Protein kinase domain

563

PF00069

NB-ARC domain

486

PF00931

Leucine-rich repeat

197

PF13855 (including PF07714)

Tyrosine kinase

174

PF07714

RNA recognition motif

173

PF00076

Cytochrome P450

171

PF00067

PPR repeat family

129

PF13041

UDP-glucoronosyl and UDP-glucosyl transferase

113

PF00201

Reverse transcriptase (RNA-dependent DNA polymerase)

110

PF00078 (including PF07727)

WD domain, G-beta repeat

102

PF00400

TIR domain

98

PF01582

DEAD/DEAH box helicase

91

PF00270

Alpha/beta hydrolase fold

82

PF12697

AAA proteins

80

PF00004

RING finger domain

78

PF13639

ATP-binding domain of ABC transporters

77

PF00005

Sugar (and other) transporter

72

PF00083

SET domain

67

PF00856

Mitochondrial carrier protein

65

PF00153

Protein phosphatase 2C

65

PF00481

  1. aProtein families were identified by BlastX searches with E-value <1e-10 in the Pfam database.