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Table 5 Number of differentially expressed genes according to their cluster and functional COG classification

From: Transcriptome sequencing and profiling of expressed genes in cambial zone and differentiating xylem of Japanese cedar (Cryptomeria japonica)

  A1 A2 A3 A4 A5 A6 A7 B1 B2 B3 B4 B5 B6 B7
[A] RNA processing and modification 3 0 6 3 11 21 0 3 23 9 4 15 60 123
[B] Chromatin structure and dynamics 1 0 7 0 13 2 4 8 10 1 1 5 18 78
[C] Energy production and conversion 20 0 25 26 37 29 0 8 31 18 0 6 32 10
[D] Cell cycle control, cell division, chromosome partitioning 1 0 8 4 23 5 0 3 12 3 0 2 20 21
[E] Amino acid transport and metabolism 7 2 32 11 39 28 4 10 23 16 1 7 8 53
[F] Nucleotide transport and metabolism 0 0 2 0 12 11 0 1 8 2 2 4 6 15
[G] Carbohydrate transport and metabolism 9 0 65 26 113 41 9 29 32 23 2 19 69 47
[H] Coenzyme transport and metabolism 11 0 2 7 19 7 1 1 8 2 0 1 3 5
[I] Lipid transport and metabolism 6 0 34 10 53 33 9 13 37 18 1 18 17 40
[J] Translation, ribosomal structure and biogenesis 7 0 28 1 11 8 0 35 9 5 0 4 13 42
[K] Transcription 15 2 19 7 30 23 3 12 59 24 2 20 91 98
[L] Replication, recombination and repair 0 0 8 5 8 4 2 7 16 4 1 5 18 35
[M] Cell wall/membrane/envelope biogenesis 2 1 29 9 65 17 5 11 19 3 0 3 14 38
[N] Cell motility 0 0 0 2 1 0 0 0 1 0 0 0 1 2
[O] Posttranslational modification, protein turnover, chaperones 18 0 30 37 51 84 29 21 44 33 10 20 62 110
[P] Inorganic ion transport and metabolism 9 0 24 8 11 15 5 7 8 8 1 9 12 48
[Q] Secondary metabolites biosynthesis, transport and catabolism 8 2 17 11 50 31 9 18 68 36 1 7 36 48
[R] General function prediction only 16 0 104 52 133 121 26 45 159 60 7 50 132 263
[S] Function unknown 18 0 61 23 87 39 5 22 37 50 4 33 68 69
[T] Signal transduction mechanisms 23 4 97 22 126 40 32 51 77 40 10 88 144 435
[U] Intracellular trafficking, secretion, and vesicular transport 5 0 48 26 45 17 3 20 12 6 0 8 25 28
[V] Defense mechanisms 2 0 8 8 35 19 7 19 20 15 3 55 64 227
[W] Extracellular structures 1 0 2 1 22 2 1 0 0 0 0 0 1 3
[X] Unassigned 21 2 70 25 123 67 24 19 87 36 5 43 98 146
[Y] Nuclear structure 1 0 3 0 1 0 1 5 1 0 0 3 0 9
[Z] Cytoskeleton 4 0 32 19 41 9 0 14 5 1 0 9 15 8