Table 5 Number of differentially expressed genes according to their cluster and functional COG classification
| Â | A1 | A2 | A3 | A4 | A5 | A6 | A7 | B1 | B2 | B3 | B4 | B5 | B6 | B7 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
[A] | RNA processing and modification | 3 | 0 | 6 | 3 | 11 | 21 | 0 | 3 | 23 | 9 | 4 | 15 | 60 | 123 |
[B] | Chromatin structure and dynamics | 1 | 0 | 7 | 0 | 13 | 2 | 4 | 8 | 10 | 1 | 1 | 5 | 18 | 78 |
[C] | Energy production and conversion | 20 | 0 | 25 | 26 | 37 | 29 | 0 | 8 | 31 | 18 | 0 | 6 | 32 | 10 |
[D] | Cell cycle control, cell division, chromosome partitioning | 1 | 0 | 8 | 4 | 23 | 5 | 0 | 3 | 12 | 3 | 0 | 2 | 20 | 21 |
[E] | Amino acid transport and metabolism | 7 | 2 | 32 | 11 | 39 | 28 | 4 | 10 | 23 | 16 | 1 | 7 | 8 | 53 |
[F] | Nucleotide transport and metabolism | 0 | 0 | 2 | 0 | 12 | 11 | 0 | 1 | 8 | 2 | 2 | 4 | 6 | 15 |
[G] | Carbohydrate transport and metabolism | 9 | 0 | 65 | 26 | 113 | 41 | 9 | 29 | 32 | 23 | 2 | 19 | 69 | 47 |
[H] | Coenzyme transport and metabolism | 11 | 0 | 2 | 7 | 19 | 7 | 1 | 1 | 8 | 2 | 0 | 1 | 3 | 5 |
[I] | Lipid transport and metabolism | 6 | 0 | 34 | 10 | 53 | 33 | 9 | 13 | 37 | 18 | 1 | 18 | 17 | 40 |
[J] | Translation, ribosomal structure and biogenesis | 7 | 0 | 28 | 1 | 11 | 8 | 0 | 35 | 9 | 5 | 0 | 4 | 13 | 42 |
[K] | Transcription | 15 | 2 | 19 | 7 | 30 | 23 | 3 | 12 | 59 | 24 | 2 | 20 | 91 | 98 |
[L] | Replication, recombination and repair | 0 | 0 | 8 | 5 | 8 | 4 | 2 | 7 | 16 | 4 | 1 | 5 | 18 | 35 |
[M] | Cell wall/membrane/envelope biogenesis | 2 | 1 | 29 | 9 | 65 | 17 | 5 | 11 | 19 | 3 | 0 | 3 | 14 | 38 |
[N] | Cell motility | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 2 |
[O] | Posttranslational modification, protein turnover, chaperones | 18 | 0 | 30 | 37 | 51 | 84 | 29 | 21 | 44 | 33 | 10 | 20 | 62 | 110 |
[P] | Inorganic ion transport and metabolism | 9 | 0 | 24 | 8 | 11 | 15 | 5 | 7 | 8 | 8 | 1 | 9 | 12 | 48 |
[Q] | Secondary metabolites biosynthesis, transport and catabolism | 8 | 2 | 17 | 11 | 50 | 31 | 9 | 18 | 68 | 36 | 1 | 7 | 36 | 48 |
[R] | General function prediction only | 16 | 0 | 104 | 52 | 133 | 121 | 26 | 45 | 159 | 60 | 7 | 50 | 132 | 263 |
[S] | Function unknown | 18 | 0 | 61 | 23 | 87 | 39 | 5 | 22 | 37 | 50 | 4 | 33 | 68 | 69 |
[T] | Signal transduction mechanisms | 23 | 4 | 97 | 22 | 126 | 40 | 32 | 51 | 77 | 40 | 10 | 88 | 144 | 435 |
[U] | Intracellular trafficking, secretion, and vesicular transport | 5 | 0 | 48 | 26 | 45 | 17 | 3 | 20 | 12 | 6 | 0 | 8 | 25 | 28 |
[V] | Defense mechanisms | 2 | 0 | 8 | 8 | 35 | 19 | 7 | 19 | 20 | 15 | 3 | 55 | 64 | 227 |
[W] | Extracellular structures | 1 | 0 | 2 | 1 | 22 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 3 |
[X] | Unassigned | 21 | 2 | 70 | 25 | 123 | 67 | 24 | 19 | 87 | 36 | 5 | 43 | 98 | 146 |
[Y] | Nuclear structure | 1 | 0 | 3 | 0 | 1 | 0 | 1 | 5 | 1 | 0 | 0 | 3 | 0 | 9 |
[Z] | Cytoskeleton | 4 | 0 | 32 | 19 | 41 | 9 | 0 | 14 | 5 | 1 | 0 | 9 | 15 | 8 |