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Table 3 Mycorrhiza-regulated genes involved in photosynthesis and related metabolisms in turning tomato fruit

From: From root to fruit: RNA-Seq analysis shows that arbuscular mycorrhizal symbiosis may affect tomato fruit metabolism

ITAG2.3_descriptions Description SL2.40 Gene ID Log2ratio MYC vs CONTR
Photosystem I    
Chlorophyll a/b binding protein Chlorophyll a-b binding protein 1D Solyc02g071000.1.1 Inf
Chlorophyll a-b binding protein 3C-like Chlorophyll a-b binding protein 3C Solyc03g005780.1.1 5,75
Chlorophyll a-b binding protein 37, chloroplastic Chlorophyll a-b binding protein 5 Solyc12g006140.1.1 4,11
Chlorophyll a/b binding protein Chlorophyll a-b binding protein 1B Solyc02g070950.1.1 3,35
Chlorophyll a/b binding protein Chlorophyll a-b binding protein 1B Solyc02g071010.1.1 3,22
Photosystem I reaction center subunit VI-1, chloroplastic   Solyc06g066640.2.1 2,92
Chlorophyll a-b binding protein 13, chloroplastic Chlorophyll a-b binding protein 13 Solyc12g011450.1.1 2,76
Chlorophyll a/b binding protein Chlorophyll a-b binding protein 1B Solyc02g071030.1.1 2,68
Photosystem I reaction center subunit   Solyc08g013670.2.1 2,63
Chlorophyll a/b binding protein Chlorophyll a-b binding protein 1B Solyc02g070940.1.1 2,61
Chlorophyll a-b binding protein 6A, chloroplastic Chlorophyll a-b binding protein 6A Solyc05g056070.2.1 2,61
Chlorophyll a-b binding protein 4, chloroplastic Chlorophyll a-b binding protein 4 Solyc07g047850.2.1 2,54
Photosystem I reaction center subunit V   Solyc07g066150.1.1 2,35
Chlorophyll a-b binding protein 8, chloroplastic Chlorophyll a-b binding protein 8 Solyc10g007690.2.1 2,23
Photosystem I reaction center subunit XI   Solyc06g082950.2.1 1,61
Photosystem I reaction center subunit III   Solyc02g069460.2.1 1,31
Photosystem I reaction center subunit VI-1, chloroplastic   Solyc03g120640.2.1 1,23
Photosystem I reaction center subunit IV A   Solyc06g083680.2.1 1,10
Photosystem I reaction center subunit XI   Solyc06g082940.2.1 2,48
Photosystem I reaction center subunit III   Solyc02g069450.2.1 2,41
Photosystem I reaction center subunit II Photosystem I reaction center subunit II Solyc06g054260.1.1 2,02
Photosystem I reaction center subunit IV A   Solyc09g063130.2.1 1,73
Photosystem II    
Chloroplast photosystem II-associated protein Photosystem II 22 kDa protein Solyc06g060340.2.1 5,06
Photosystem II reaction center psb28 protein   Solyc09g064500.2.1 2,53
Photosystem II reaction center W protein   Solyc06g084050.2.1 2,37
Chlorophyll a-b binding protein, chloroplastic Chlorophyll a-b binding protein CP24 10A Solyc01g105030.2.1 2,19
Chlorophyll a-b binding protein, chloroplastic Chlorophyll a-b binding protein CP24 10B Solyc01g105050.2.1 2,07
Chloroplast photosystem II subunit X (Fragment)   Solyc05g025600.1.1 1,97
Oxygen-evolving enhancer protein 2, chloroplastic Oxygen-evolving enhancer protein 2 Solyc07g044860.2.1 1,58
Oxygen-evolving enhancer protein 3 Photosystem II oxygen-evolving complex protein 3 Solyc02g079950.2.1 1,16
Photosystem II reaction center W protein   Solyc09g065910.1.1 0,84
Oxygen-evolving enhancer protein 1 of photosystem II   Solyc02g090030.2.1 1,51
Oxygen-evolving enhancer protein 1 of photosystem II Oxygen-evolving enhancer protein 1 Solyc02g065400.2.1 1,24
Chlorophyll biosynthetic process    
Geranylgeranyl reductase Geranylgeranyl reductase Solyc03g115980.1.1 2,20
Magnesium-protoporphyrin IX monomethyl ester   Solyc10g077040.1.1 2,10
Magnesium chelatase H subunit   Solyc04g015750.2.1 1,11
Magnesium-protoporphyrin ix methyltransferase   Solyc03g118240.2.1 1,09
Light dependent NADH:protochlorophyllide oxidoreductase 1 Light dependent NADH:protochlorophyllide oxidoreductase 1 Solyc12g013710.1.1 2,43
Chlorophyllide a oxygenase   Solyc06g060310.2.1 1,92
Calvin cycle    
Ribulose bisphosphate carboxylase small chain Ribulose bisphosphate carboxylase small chain 1 Solyc02g063150.2.1 2,52
Ribulose bisphosphate carboxylase small chain Ribulose bisphosphate carboxylase small chain 2A Solyc03g034220.2.1 2,25
Calvin, others    
Phosphofructokinase family protein   Solyc07g045160.2.1 1,53
Fructose-1 6-bisphosphatase class 1   Solyc09g011810.2.1 3,16
Fructose-1 6-bisphosphatase class 1   Solyc04g071340.2.1 1,46
Fructose-1 6-bisphosphatase class 1   Solyc10g086730.1.1 1,35
Fructose-1 6-bisphosphatase class 1 Chloroplast sedoheptulose-1,7-bisphosphatase Solyc05g052600.2.1 1,08
Fructose-bisphosphate aldolase   Solyc02g062340.2.1 3,23
Fructose-bisphosphate aldolase   Solyc01g110360.2.1 1,83
Fructose-bisphosphate aldolase   Solyc02g084440.2.1 1,17
Chlorophyll breakdown    
Senescence-inducible chloroplast stay-green protein 2 Green flesh protein; Senescence-inducible chloroplast stay-green protein 1 Solyc08g080090.2.1 1,02
Cytochrome b6f complex and plastocyanin    
Plastoquinol-plastocyanin reductase   Solyc01g109040.2.1 2,69
Plastocyanin Plastocyanin Solyc04g082010.1.1 1,56
Cytochrome b6-f complex iron-sulfur subunit   Solyc12g005630.1.1 1,39
ATP synthases    
ATP synthase gamma chain   Solyc02g080540.1.1 2,54
ATP synthase delta subunit   Solyc12g056830.1.1 1,43
ATP synthase F1 delta subunit   Solyc05g050500.1.1 1,27
ATP synthase subunit b&apos   Solyc06g066000.1.1 0,85
NADP reductase    
Ferredoxin--NADP reductase   Solyc02g062130.2.1 1,20
Ferredoxin--NADP reductase   Solyc02g083810.2.1 0,98
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BMC Genomics

ISSN: 1471-2164

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