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Table 4 Differences between recently reported cancer genes and all other genes in the human genome

From: How to get the most from microarray data: advice from reverse genomics

Dataset

Trait

Mean RRCGs

Mean OGs

Z

Pvalue

Rank

BC_GSE10780

-LOG(P)

5.81

4.36

2.33

0.019828

6

m(AN)

6.65

6.16

3.09

0.002

5

m(T)

6.77

6.18

3.61

0.0003

3

FC

0.37

0.25

3.43081

0.000602

4

sd(AN)

0.31

0.41

3.88355

0.000103

2

sd(T)

0.62

0.45

4.52874

0.000006

1

BC_GSE3716

-LOG(P)

0.53

0.64

1.27891

0.200931

2

m(AN)

7.74

7.43

0.92

0.36

4

m(T)

7.79

7.50

0.79

0.43

5

FC

0.26

0.27

0.26448

0.791411

6

sd(AN)

0.82

0.79

1.2498

0.211373

3

sd(T)

0.89

0.80

2.71994

0.00653

1

CC_GSE31737

-LOG(P)

2.99

2.38

1.41345

0.157523

6

m(AN)

5.24

4.78

2.11

0.04

4

m(T)

5.24

4.78

2.06

0.04

5

FC

0.40

0.25

2.78341

0.005379

3

sd(AN)

0.52

0.40

3.52082

0.00043

2

sd(T)

0.57

0.43

4.12776

0.000037

1

LC_GSE19188

-LOG(P)

6.47

5.38

1.91017

0.056112

6

m(AN)

6.55

6.24

2.01

0.04

5

m(T)

6.71

6.57

2.11

0.04

4

FC

0.61

0.38

4.50134

0.000007

3

sd(AN)

0.52

0.35

5.09778

<10-6

2

sd(T)

0.84

0.56

7.51503

<10-6

1

LC_GSE18842

-LOG(P)

6.01

4.32

3.59092

0.00033

6

m(AN)

6.67

5.75

3.71

0.0002

5

m(T)

6.81

5.75

4.91

0.000001

4

FC

0.78

0.39

5.99594

<10-6

2

sd(AN)

0.51

0.33

5.1629

<10-6

3

sd(T)

0.82

0.47

8.26221

<10-6

1

PC_GSE6919

-LOG(P)

0.94

0.87

0.74248

0.457796

6

m(AN)

7.16

7.01

0.92

0.36

5

m(T)

7.18

6.99

1.04

0.3

4

FC

0.17

0.14

1.47057

0.141409

3

sd(AN)

0.63

0.59

1.84723

0.064715

2

sd(T)

0.69

0.64

2.15976

0.030792

1

PC_GSE21034

-LOG(P)

1.69

1.69

0.74953

0.453541

6

m(AN)

8.09

7.87

2.16

0.03

4

m(T)

8.15

7.83

2.25

0.02

3

FC

0.24

0.16

1.98956

0.04664

5

sd(AN)

0.32

0.27

2.66829

0.007624

2

sd(T)

0.34

0.29

2.99909

0.002708

1

  1. RRCG, recently reported cancer genes; OG, other genes.