Skip to main content

Table 1 Thirty-one differentially expressed transcripts between the mammary gland of two cows with high milk protein and fat percentage and two cows with low protein and fat percentage

From: Transcriptional profiling of mammary gland in Holstein cows with extremely different milk protein and fat percentage using RNA sequencing

Transcript symbol NCBI gene ID Description log2fold change (high/low) p value FDR q value Detected by
SAA3 281474 Serum amyloid A3 -2.09 9.90E-11 1.47E-07 DEseq
HEATR7B2 518808 HEAT repeat family member 7B2 3.49 8.36E-10 1.04E-06 DEseq
C4BPA 281651 Complement component 4 binding protein, alpha -1.57 9.20E-10 1.04E-06 DEseq
TRIB3 538465 Tribbles homolog 3 -2.64 3.38E-08 2.63E-05 DEseq, Cuffdiff
SESN2 509863 Sestrin 2 -3.01 4.08E-08 2.99E-05 DEseq, Cuffdiff
CHAC1 505991 Cation transport regulator homolog 1 -2.86 8.62E-08 5.97E-05 DEseq, Cuffdiff
HSPD1 511913 Heat shock 60 kD protein 1 -0.57 1.12E-07 7.35E-05 DEseq
SLC25A38 512325 Solute carrier family 25 member 38 -0.70 1.57E-07 9.80E-05 DEseq
NR4A1 528390 Nuclear receptor subfamily 4, group A, member 1 2.42 4.10E-07 0.000243 DEseq
BMX 531514 BMX non-receptor tyrosine kinase 2.92 6.94E-07 0.000393 DEseq
SAA1 616035 Serum amyloid A1 -5.84 9.99E-07 0.000541 DEseq, Cuffdiff
ATF3 515266 Activating transcription factor 3 -2.70 1.24E-06 0.000641 DEseq, Cuffdiff
RPL23A 507168 Ribosomal protein L23a -5.31 1.88E-05 0.038988 DEseq, Cuffdiff
CDH16 508777 Cadherin 16, KSP-cadherin -1.27 1.29E-06 0.000641 DEseq
VEGFA 281572 Vascular endothelial growth factor A -1.25 1.35E-06 0.000647 DEseq
KRT24 788424 Keratin 24 -1.83 6.96E-06 0.003095 DEseq
EIF4G3 534618 Eukaryotic translation initiation factor 4 gamma, 3 -0.49 9.76E-06 0.004052 DEseq
CDKN1A 513497 Cyclin-dependent kinase inhibitor 1A -2.20 1.22E-05 0.004742 DEseq
BOLA-DQB 282495 Major histocompatibility complex, class II, DQ beta -6.92 1.21E-05 0.004742 DEseq
ARID1B 505229 AT rich interactive domain 1B (SWI1-like) -0.70 1.46E-05 0.005502 DEseq
PTHLH 286767 Parathyroid hormone-like hormone -0.76 1.69E-05 0.006194 DEseq
ZC3H14 511473 Zinc finger CCCH-type containing 14 -0.65 1.99E-05 0.007094 DEseq
H4 280691 Histone H4 -2.17 2.07E-05 0.007179 DEseq
FAM71A 616153 Family with sequence similarity 71, member A -1.0 2.53E-05 0.008504 DEseq
THBS4 541281 Thrombospondin 4 -2.10 3.21E-05 0.010249 DEseq
DDIT3 777788 DNA-damage-inducible transcript 3 -1.70 4.01E-05 0.012494 DEseq
M-SAA3.2 618238 Mammary serum amyloid A3.2 -2.49 4.39E-05 0.013339 DEseq
HIST1H2AC 506900 Histone cluster 1, H2ac -2.01 5.54E-05 0.016423 DEseq
FCAMR 100297408 Fc receptor, IgA, IgM, high affinity -2.42 6.43E-05 0.018621 DEseq
DNER 516825 Delta/notch-like EGF repeat containing -1.0 8.29E-05 0.023475 DEseq
P4HA2 507327 Prolyl 4-hydroxylase, alpha polypeptide II -0.69 9.24E-05 0.025587 DEseq