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Table 1 Thirty-one differentially expressed transcripts between the mammary gland of two cows with high milk protein and fat percentage and two cows with low protein and fat percentage

From: Transcriptional profiling of mammary gland in Holstein cows with extremely different milk protein and fat percentage using RNA sequencing

Transcript symbol

NCBI gene ID

Description

log2fold change (high/low)

p value

FDR q value

Detected by

SAA3

281474

Serum amyloid A3

-2.09

9.90E-11

1.47E-07

DEseq

HEATR7B2

518808

HEAT repeat family member 7B2

3.49

8.36E-10

1.04E-06

DEseq

C4BPA

281651

Complement component 4 binding protein, alpha

-1.57

9.20E-10

1.04E-06

DEseq

TRIB3

538465

Tribbles homolog 3

-2.64

3.38E-08

2.63E-05

DEseq, Cuffdiff

SESN2

509863

Sestrin 2

-3.01

4.08E-08

2.99E-05

DEseq, Cuffdiff

CHAC1

505991

Cation transport regulator homolog 1

-2.86

8.62E-08

5.97E-05

DEseq, Cuffdiff

HSPD1

511913

Heat shock 60 kD protein 1

-0.57

1.12E-07

7.35E-05

DEseq

SLC25A38

512325

Solute carrier family 25 member 38

-0.70

1.57E-07

9.80E-05

DEseq

NR4A1

528390

Nuclear receptor subfamily 4, group A, member 1

2.42

4.10E-07

0.000243

DEseq

BMX

531514

BMX non-receptor tyrosine kinase

2.92

6.94E-07

0.000393

DEseq

SAA1

616035

Serum amyloid A1

-5.84

9.99E-07

0.000541

DEseq, Cuffdiff

ATF3

515266

Activating transcription factor 3

-2.70

1.24E-06

0.000641

DEseq, Cuffdiff

RPL23A

507168

Ribosomal protein L23a

-5.31

1.88E-05

0.038988

DEseq, Cuffdiff

CDH16

508777

Cadherin 16, KSP-cadherin

-1.27

1.29E-06

0.000641

DEseq

VEGFA

281572

Vascular endothelial growth factor A

-1.25

1.35E-06

0.000647

DEseq

KRT24

788424

Keratin 24

-1.83

6.96E-06

0.003095

DEseq

EIF4G3

534618

Eukaryotic translation initiation factor 4 gamma, 3

-0.49

9.76E-06

0.004052

DEseq

CDKN1A

513497

Cyclin-dependent kinase inhibitor 1A

-2.20

1.22E-05

0.004742

DEseq

BOLA-DQB

282495

Major histocompatibility complex, class II, DQ beta

-6.92

1.21E-05

0.004742

DEseq

ARID1B

505229

AT rich interactive domain 1B (SWI1-like)

-0.70

1.46E-05

0.005502

DEseq

PTHLH

286767

Parathyroid hormone-like hormone

-0.76

1.69E-05

0.006194

DEseq

ZC3H14

511473

Zinc finger CCCH-type containing 14

-0.65

1.99E-05

0.007094

DEseq

H4

280691

Histone H4

-2.17

2.07E-05

0.007179

DEseq

FAM71A

616153

Family with sequence similarity 71, member A

-1.0

2.53E-05

0.008504

DEseq

THBS4

541281

Thrombospondin 4

-2.10

3.21E-05

0.010249

DEseq

DDIT3

777788

DNA-damage-inducible transcript 3

-1.70

4.01E-05

0.012494

DEseq

M-SAA3.2

618238

Mammary serum amyloid A3.2

-2.49

4.39E-05

0.013339

DEseq

HIST1H2AC

506900

Histone cluster 1, H2ac

-2.01

5.54E-05

0.016423

DEseq

FCAMR

100297408

Fc receptor, IgA, IgM, high affinity

-2.42

6.43E-05

0.018621

DEseq

DNER

516825

Delta/notch-like EGF repeat containing

-1.0

8.29E-05

0.023475

DEseq

P4HA2

507327

Prolyl 4-hydroxylase, alpha polypeptide II

-0.69

9.24E-05

0.025587

DEseq