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Table 1 Summary of RNA-sequencing results

From: Transcriptome analysis identifies Bacillus anthracis genes that respond to CO2through an AtxA-dependent mechanism

Sample ID Condition OD600 Total reads Unique reads Unique reads (%) Gene reads Gene reads (%)
1 WT/CO2 2.0 62,677,017 35,654,298 57 29,959,488 84
2 WT/CO2 2.1 63,937,489 40,947,059 64 34,294,534 84
3 ΔAtxA/air 2.0 69,132,947 32,303,226 47 27,284,918 84
4 ΔAtxA/air 1.9 67,144,286 34,755,237 52 30,494,637 88
5 WT/air 2.0 68,812,647 23,082,971 34 17,928,149 78
6 WT/air 2.2 63,046,363 45,881,828 73 39,525,419 86
7 ΔAtxA/CO2 2.0 60,638,322 39,860,432 66 34,405,268 86
8 ΔAtxA/CO2 2.3 66,526,879 34,284,152 52 28,722,268 84
  1. OD600 indicates the optical density at which each bacterial sample was subjected to RNA isolation. Total reads represent the number of high-quality reads. Unique reads represents reads that mapped to unique portions of the B. anthracis genome or pXO1 plasmid, excluding ribosomal RNA. Unique reads (%) was calculated as the ratio of unique reads to total reads. Gene reads refers to the number of unique reads that mapped to known protein-coding genes. Gene reads (%) was calculated as the ratio of gene reads to unique reads.