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Table 3 Assembly results: number of assembled reads, number of contigs, total transcriptome coverage, average length per contig, and average number of reads per contig

From: High-throughput transcriptome sequencing and preliminary functional analysis in four Neotropical tree species

 

Carapa guianensis

Eperua falcata

Symphonia globulifera

Virola surinamensis

Number of reads

248145

224554

167140

219223

Number of assembled reads

153551 (61.9%)

132213 (58.9%)

103433 (61.9%)

142970 (65.2%)

Number of contigs

21770

23390

17103

21070

Total length (bp)

11393209

9688583

7743116

9725915

Average length per contig (bp)

523

414

453

462

N50

558

441

486

506

Average number of reads per contig

7

6

6

7

Proportion of contigs with 10 reads or fewer

89%

92%

91%

88%