Characterization of the caleosin gene family in the Triticeae

BMC Genomics

Table 1 Caleosin genes from four species ^a

	T. aestivum			Homologues
Gene	Chromosome	Nucleotide	aa	B. distachyon ^b	H. vulgare ^b	O. sativa (Japonica) ^b
Clo1	2AL	1600	302	Bradi5g15410	gi\|34538472	gi297723297
Clo1	2BL	1154	302
Clo1	2DL	1178	302
Clo2	2AL	963	244	Bradi5g15427	gi\|34538476
Clo2	2BL	986	245	Bradi5g15417
Clo2	2DL	877	245
Clo3	6AS	907	217	Bradi1g70390
Clo3	6BS	818	215
Clo3	6DS	793	220
Clo4	3AL	1039	217	Bradi1g70400		gi115467408
Clo4	3B	1075	217	Bradi1g44207
Clo4	3DL	1084	217
Clo5	6AL	1053	229	Bradi3g56810	gi\|6900307
Clo5	6BL	1051	224
Clo5	6DL	1150	222
Clo6	6AL	827	216	Bradi3g56820	gi\|151420803	gi115467410
Clo6	6BL	735	205
Clo6	6DL	815	214
Clo7	7AS	827	198	Bradi1g44200	gi\|151419867	gi115448521
Clo7	7BS	917	213
Clo7	7DS	958	212
Clo8	7AS	1102	214		gi\|326515641
Clo8	7BS	962	213
Clo8	7DS	939	215
Clo9	4AS	994	232	Bradi1g69571	gi\|151426143
Clo9	4BS	1129	235
Clo9	4DL	1164	233
Clo10	2AL	907	234		gi\|326490092	gi115459382
Clo10	2BL	866	244
Clo10	2DL	897	243
Clo10	2DL	836	244
Clo11	2AL	907	234		ViroBlast
Clo11	2BL	1062	244
Clo11	2DL	932	242

^aThe full set of complete caleosin sequences for wheat and rye can be found in Additional file 16. The corrected Hv-Clo6 cDNA of H. vulgare sequence and Hv-Clo8 derived from ESTs and the Brachypodium sequence Bradi1g70400 with an extended CDS are included in Additional file 17.
^bCaleosin sequences for Brachypodium, H. vulgare, and O. sativa, represent paralogous members of the gene family, and do not correspond to the individual homeologous gene copies found in wheat.

ISSN: 1471-2164