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Table 1 Genes which are up regulated in large follicles with respect to small follicles†

From: Transcriptome profiling of granulosa cells of bovine ovarian follicles during growth from small to large antral sizes

Gene symbol

Fold change

Gene symbol

Fold change

Gene symbol

Fold change

Cell cycle

RASA2

5.5

TACC1

3.5

RAD50

3.1

TBCEL

4.8

TOPORS

3.3

HELZ

3.1

CDK13

4.3

TRIB2

3.2

  

TPR

4.3

ANAPC5

3.1

  

Cell morphology

LIMA1

8.2

FERMT2

4.2

ARPC1B

3.3

SLMAP

5.1

TTLL3

3.9

  

MYO1B

5.1

ABLIM1

3.7

  

Cytokines, hormones and receptors

IFI30

39.0

F2RL1

5.3

THBS3

3.5

PTHLH

12.8

DKK3

5.3

IGFBP6

3.5

F2R

8.9

NPR3

5.2

BMPR2

3.3

LHCGR

8.8

LPHN2

4.7

BAI2

3.3

IGFBP4

7.3

PGR

4.7

GPR88

3.2

F3

7.2

TNFAIP8L3

4.7

SCG2

3.2

OPTN

6.5

GABARAPL1

4.6

OSBPL8

3.1

IL4R

6.2

STRA6

4.2

TM2D1

3.1

IL6R

5.7

RYK

4.2

BMPR1A

3.1

GRK5

5.6

INHBA

3.8

NRP1

3.0

NR5A2

5.5

LGALS3BP

3.5

GPR173

3.0

PTGFR

5.5

    

Directional cell growth

LRP8

53.6

SLITRK2

5.1

SEMA6A

3.3

EFNA5

8.6

PLXNC1

4.8

NINJ1

3.2

MPP5

7.1

PLXNB2

4.7

ROBO1

3.1

ROBO2

6.7

*EPHB6

3.8

ROCK1

3.1

SEMA6D

6.2

COLEC11

3.5

  

Extracellular matrix and synthesis

TNFAIP6

279.6

COL16A1

6.0

VCAN

5.0

SPOCK2

22.0

LAMA1

5.8

LEPREL1

4.9

COL4A1

6.8

PCOLCE

5.7

SDC2

3.8

Intercellular and cell to matrix adhesion

ARHGAP18

20.5

CDH11

4.6

TSPAN9

3.4

ITGB5

11.4

*BST2

4.4

PARD3B

3.2

VCAM1

7.3

TNS3

3.6

TSPAN2

3.0

CSPG4

5.5

CCM2

3.6

UBQLN1

3.0

ARHGAP17

4.8

    

Ion transport

*TMEM20

4.3

    

Protein trafficking

HSP90AA1

7.0

SH3GL2

4.1

RAB7A

3.3

TMEM27

5.1

SCYL2

4.0

CLGN

3.2

GOLGA4

4.6

MLEC

3.8

CLTC

3.2

TMEM47

4.5

PLEKHG1

3.6

FKBP9

3.1

PLEKHA2

4.2

PLEKHB2

3.5

CANX

3.1

PLEKHH3

4.1

GDI1

3.4

  

Proteolysis or inhibition

PRSS23

48.5

ADAMTS4

4.7

FBXL20

3.9

PLAT

17.5

HM13

4.5

ADAM10

3.7

ACE2

12.9

RNF128

4.5

MYCBP2

3.4

CPD

11.8

CTSB

4.4

HERPUD1

3.3

SERPINA5

11.2

SPG7

4.2

RNF20

3.3

ECE1

9.5

DERL1

4.1

UBR3

3.2

ADAM9

8.4

USP4

4.0

MARCH5

3.2

TIMP2

7.9

UBR1

4.0

FAF2

3.2

ADAM12

6.6

MARCH6

3.9

TTC3

3.1

USP7

6.4

    

RNA processing

NOL3

6.0

PBRM1

4.3

LUC7L3

3.8

CPEB4

5.1

PRPF38B

4.2

PNISR

3.7

UTP6

4.8

RBM5

4.0

SYNCRIP

3.6

CSDE1

4.7

TIA1

3.9

RNASEK

3.6

CHD1

4.7

CTR9

3.9

DDX46

3.4

SF3B1

4.6

HNRPLL

3.9

DICER1

3.1

RBM25

4.4

    

Transcription regulation

TOX

11.4

ZNF317

3.8

BRWD1

3.3

NMI

8.4

HUWE1

3.8

NOSTRIN

3.2

NOTCH1

8.4

TRIM25

3.7

JARID2

3.2

TOB1

6.3

CREB3L2

3.7

ZNF462

3.1

ZNF292

6.0

ADNP

3.7

ANKRD10

3.1

MTPN

5.7

ZNF609

3.6

CITED2

3.1

AFF1

5.5

KLF6

3.5

MED24

3.1

FOXP2

5.3

*MLL3

3.5

GPS2

3.1

ID2

4.5

NCOR1

3.5

HMGXB3

3.1

ID3

4.3

RBFOX2

3.4

TFCP2

3.1

*SON

4.2

ZNF24

3.3

CITED1

3.1

WHSC1L1

3.9

    

Translation regulation

EIF4G3

7.4

BZW2

3.6

EIF2C2

3.3

EIF4EBP1

7.3

EIF2C3

3.4

  

BZW1

4.2

IREB2

3.4

  

Transport

SLC5A11

15.6

MAL2

3.8

SEC63

3.4

APOA2

12.5

CLIC4

3.7

STAR

3.4

SLC39A8

9.1

CPNE8

3.7

TFR2

3.3

AP2B1

6.8

ATP13A3

3.6

COPZ1

3.3

SLC25A28

5.8

SLC25A12

3.6

MICU1

3.2

SLC27A3

5.7

SLC26A11

3.6

NUP85

3.2

TNPO1

5.5

AP3S2

3.6

CYCS

3.2

SLC40A1

5.3

TM9SF4

3.5

APOA1

3.2

ABCB1

5.1

AP1S2

3.5

CLTC

3.2

ATP6V1A

4.3

ACBD5

3.5

STBD1

3.1

RRBP1

4.2

    

Other enzymes

ME3

26.7

PTPN13

4.2

GPX3

3.2

CYBB

18.1

SCD5

4.2

PDP1

3.2

CYP19A1

14.2

FDFT1

4.1

LARGE

3.2

NT5E

12.8

UGCG

4.0

MLL5

3.2

RGN

9.8

DPYSL2

3.8

EDEM2

3.1

PYGL

8.9

PLD1

3.7

NCEH1

3.1

B3GALT2

6.5

PPAP2B

3.7

XRN2

3.1

PDSS1

6.0

TET2

3.7

RDH11

3.1

HSD3B2

6.0

PFKM

3.7

CHST10

3.1

PPM1K

5.9

SGSH

3.6

PTP4A2

3.1

CYP11A1

5.8

CUL3

3.5

PTPN11

3.1

PIGS

5.5

QSOX1

3.5

MAOA

3.1

IDH3A

5.5

ACSS2

3.5

CA8

3.0

CMAHP

4.6

DPYD

3.4

HECTD1

3.0

PDPK1

4.5

MTR

3.4

PPP2R5E

3.0

AHCYL2

4.4

POR

3.3

CUL1

3.0

Other signalling

BEX2

9.0

ARHGEF3

4.8

*PRKAG2

3.4

PIK3R1

9.0

AMIGO2

4.7

SNTB2

3.4

DTNA

8.5

MAP2K4

4.4

GLG1

3.3

DACT1

8.4

NDRG3

4.4

GNA11

3.3

ARFGAP3

7.6

APC

4.0

IER3

3.3

GADD45B

6.8

PDCD4

4.0

NISCH

3.3

NDRG4

6.7

BMP2K

3.8

INSIG2

3.2

BCAS3

6.0

Ifi27l1

3.7

STIM1

3.2

MIA3

5.4

ERRFI1

3.6

BCL2L2

3.2

MS4A8B

5.3

ARHGEF6

3.5

PIP4K2A

3.1

SAFB2

4.9

FICD

3.4

KIRREL

3.0

MAPK6

4.8

    

Other

FAM114A1

18.8

TMEM176A

4.1

ANKRD12

3.4

DDX26B

9.7

WDFY4

3.9

*WDFY2

3.4

LHFPL2

6.8

PSMD4

3.8

CHCHD10

3.3

RNF213

5.9

RHBDD2

3.8

MRAP

3.3

OBSL1

5.8

*ZNF317

3.8

TMEM50B

3.2

USHBP1

5.2

TMEM176B

3.7

BRWD3

3.2

RSRC2

5.1

PSAP

3.7

*OXR1

3.2

KLHL28

5.0

LRIG3

3.7

HIATL1

3.1

LINGO2

5.0

AKAP8L

3.6

MGARP

3.1

PDLIM4

5.0

FAM126B

3.6

PHF3

3.1

ODF2L

4.4

RCN3

3.6

MPV17L2

3.1

BTBD7

4.3

LRRC2

3.6

TBC1D5

3.0

RNF144B

4.3

SUSD4

3.5

Gm16462/

3.0

R3HCC1

4.2

UHRF1BP1L

3.5

Gm8787

 

TXNIP

4.1

YPEL5

3.5

VWA1

3.0

RCAN3

4.1

FAM174B

3.4

ZBTB33

3.0

  1. †(≥3 fold, P < 0.05) and categorised by function. Genes are listed in descending order of fold change within each category. Significance was determined by Benjamini-Hochberg post-hoc test for multiple corrections following one way ANOVA.
  2. *indicates genes determined from the Partek analysis based on the Affymetrix annotations which were not assigned identities by IPA.