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Table 1 List of somatic SNV calling methods and versions

From: Comparison of somatic mutation calling methods in amplicon and whole exome sequence data

Methods Version Reference
GATK UnifiedGenotyper in NaiveSubtract v2.3.9 [22]
MuTect v1.1.4 [7]
SomaticSniper v1.0.2 [9]
Strelka v1.0.7 [11]
VarScan2 v2.3.6 [8]
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BMC Genomics

ISSN: 1471-2164

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