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Table 1 List of somatic SNV calling methods and versions

From: Comparison of somatic mutation calling methods in amplicon and whole exome sequence data

Methods

Version

Reference

GATK UnifiedGenotyper in NaiveSubtract

v2.3.9

[22]

MuTect

v1.1.4

[7]

SomaticSniper

v1.0.2

[9]

Strelka

v1.0.7

[11]

VarScan2

v2.3.6

[8]