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Table 2 Evidence for within and between breed selection at breed-defining (type 1) loci

From: Selection for complex traits leaves little or no classic signatures of selection

Locus Evidence for selection*  
Within breed Differentiation between breeds3
POLLED Angus1,2 1. Holstein with Angus, Murray Grey and Limousin Figure 1
Charolais1,2
Holstein1,2
Limousin1,2
Hereford1
Shorthorn1
MC1-R Limousin1,2 1. Breeds with black (ED) allele (Holstein, Angus, Murray Grey) with breeds with recessive red (e) allele (Charolais, Limousin, Shorthorn, Hereford) Additional file 3: Figure S4
Charolais1  
Angus1 2. Jersey (E+ allele) with all other breeds, except Hereford
Holstein1  
Murray Grey1
PMEL Charolais1,2 1. Charolais with all other breeds Additional file 3: Figure S5
Angus2 2. Murray Grey with all breeds, excluding Jersey
Murray Grey1 3. Shorthorn and Jersey
KIT Hereford1,2 1. Hereford with all other breeds. Additional file 3: Figure S6
Holstein1 2. Holstein with all breeds, except Jersey
3. Shorthorn with all breeds, except Jersey
4. Jersey with Angus, Charolais and Limousin
KITLG Hereford1 1. Hereford will all other breeds, except Murray Grey Additional file 3: Figure S7
2. Murray Grey and Charolais with each other, and with Holstein, Angus and Limousin
3. Shorthorn with Augus
  1. *windows encompassing loci and identified in the top 5% of within or between breed measures of selection. Measures of selection were 1haplotype homozygosity (HAPH), 2integrated haplotype score (|iHS|) and 3F ST .