Table 1 Newly identified miRNAs
miRNA | Sequence (5'-3′) | Ori | Size (nt) | Loci | miRNA abundance | Sequence of cloned putative miRNA* (5′-3′) | miRNA* abundance | Precursor location |
|---|---|---|---|---|---|---|---|---|
zma-miRs1a | GGUGAACCACCGGACAUCGCAC | 5′ | 22 | 1 | 13 | NO | 0 | Chr10:170455..170536:- |
zma-miRs1b | GGUGAACCACCGGACAUCGCAC | 3′ | 22 | 1 | 21 | NO | 0 | Chr1:261835708..261835791:- |
zma-miRs2 | UUUGACCAAGUUUGUAGAAAA | 5′ | 21 | 1 | 10 | NO | 0 | Chr10:7112184..7112314:- |
zma-miRs3 | UAUACACUGUGGUUGUGGAUG | 5′ | 21 | 1 | 64 | NO | 0 | Chr10:140401501..140401631:- |
zma-miRs4 | UAGCCAAGCAUGAUUUGCCCGU | 5′ | 22 | 1 | 7 | NO | 0 | Chr1:297173995..297174083:+ |
zma-miRs5 | UGAUGCCAUUCAUUAAUCUC | 5′ | 20 | 3 | 16 | NO | 0 | Chr1:16908651..16908718:- |
zma-miRs6a | UGGGUCAAGAAAGUAGAUGAAG | 5′ | 22 | 6 | 4439 | UCAUGUAUUUCUUCAUCCAGG | 6 | Chr1:145766064..145766151:- |
zma-miRs6b | UGGGUCAAGAAAGUAGAUGAAG | 5′ | 22 | 2 | 4314 | UCAUGUAUUUCUUCAUCCAGG | 6 | Chr8:65126597..65126681:+ |
zma-miRs7 | UUGGAGGGGAUUGAGGGGGCUA | 5′ | 22 | 1 | 13 | NO | 0 | Chr2:160587100..160587178:- |
zma-miRs8 | UUGGAUUGGUUUAGAGUGGUU | 5′ | 21 | 3 | 9 | NO | 0 | Chr2:193765038..193765121:- |
zma-miRs9 | UUAGGCUCGGGGACUAUGGUG | 5′ | 21 | 1 | 56 | CCGUGGCUCCUGCUCCUGAUG | 1 | Chr3:37277918..37278069:+ |
zma-miRs10 | AUCGGCUGAUCGUUUGGCCUG | 5′ | 21 | 1 | 12 | NO | 0 | Chr3:95960134..95960203:+ |
zma-miRs11 | CGUGGAACUUCUUCGGCGUAG | 5′ | 21 | 1 | 59 | GUGCCGAAGAAGAACUUCCUGCA | 2 | Chr4:6987996..6988075:- |
zma-miRs12 | UGGCUGUGAUGACAAAAAGGU | 5′ | 21 | 1 | 14 | NO | 0 | Chr5:13726506..13726621:+ |
zma-miRs13 | UGAGUUUAGGGACUGGGAUGG | 3′ | 21 | 1 | 5 | NO | 0 | Chr5:33732172..33732274:+ |
zma-miRs14 | UGAAACUGUCACAGCAUGAUC | 5′ | 21 | 1 | 6 | NO | 0 | Chr5:7648838..7648949:- |
zma-miRs15 | UGUUCGGUUGCUCAGGAACGGU | 5′ | 22 | 1 | 9 | NO | 0 | Chr6:102874227..102874366:+ |
zma-miRs16 | UUGCCAGGAGGAGGAUGGAGC | 3′ | 21 | 1 | 65 | NO | 0 | Chr9:7189032..7189100:+ |
zma-miRs17 | UGAAAAGCUAGAACGAUUUAC | 3′ | 21 | 1 | 9 | NO | 0 | Chr9:33858898..33859002:- |
zma-miRs18 | GUACUACGGGUACUGCGAGC | 3′ | 20 | 1 | 5 | NO | 0 | Chr1:140132808..140132921:+ |
zma-miRs19a | UGGUUGACAUAUGGACCCCAC | 5′ | 21 | 1 | 5 | NO | 0 | Chr2:196666638..196666791:+ |
zma-miRs19b | UGGUUGACAUAUGGACCCCAC | 5′ | 21 | 1 | 5 | NO | 0 | Chr2:196666638..196666790:- |
zma-miRs19c | UGGUUGACAUAUGGACCCCAC | 5′ | 21 | 1 | 5 | NO | 0 | Chr5:182646213..182646347:+ |
zma-miRs19d | UGGUUGACAUAUGGACCCCAC | 5′ | 21 | 1 | 5 | NO | 0 | Chr9:114976246..114976391:- |
zma-miRs20 | AGGGCUUGUUCGUUUUGGAGU | 5′ | 21 | 1 | 35 | NO | 0 | Chr4:41972777..41972854:- |
zma-miRs21 | GGUGUUGGUGCCUGUAGCGG | 5′ | 20 | 1 | 7 | NO | 0 | Chr7:6041852..6041939:+ |