miRNAa | Target gene | Location of the target site | Repeat normalized read abundance (category)b | Target gene annotationc | Other degradome evidence | 5′-RACE or genetic experiment | |||
---|---|---|---|---|---|---|---|---|---|
 |  |  | I | II | III | IV |  |  |  |
miR156 | GRMZM2G156621 | CDS | 2.50 (3) | 3.50 (2) | 39.00 (2) | Â | SBP-box transcription factor# | [26] | N |
miR156 | GRMZM2G067624 | 3′-UTR | 18.00 (2) | 46.50 (2) | 51.50 (2) | 97.00 (2) | SBP-box transcription factor# | N | |
miR156 | GRMZM2G163813 | CDS/3′-UTR | 3.33 (2) | 17.67 (2) |  |  | SBP-box transcription factor# | N | |
miR156 | GRMZM2G113779 | 3′-UTR | 18.00 (2) | 4.00 (2) | 86.00 (2) | 352.00 (0) | SBP-box transcription factor | [28] | N |
miR156 | GRMZM2G126827 | CDS | 2.50 (3) | 3.50 (2) | 39.00 (2) | Â | SBP-box transcription factor# | [26] | N |
miR156 | GRMZM2G318882 | 5′-UTR | 0.03 (1) |  |  |  | SBP-box transcriptionfactor | N | N |
miR156 | GRMZM2G136158 | CDS | 0.03 (1) | Â | Â | Â | SBP-box transcription factor | N | N |
miR156 | GRMZM2G460544 | CDS | Â | Â | 2.00 (3) | Â | SBP-box transcription factor# | N | |
miR156 | GRMZM5G878561 | CDS | Â | Â | 6.50 (3) | 7.50 (0) | SBP-box transcription factor | [26] | N |
miR156 | GRMZM2G307588 | CDS | Â | Â | 2.00 (3) | Â | SBP-box transcription factor# | N | |
miR156 | GRMZM2G371033 | CDS | Â | Â | 6.50 (1) | 7.50 (0) | SBP-box transcription factor | [26] | N |
miR156 | GRMZM2G160917 | CDS/3′-UTR |  |  | 2.00 (3) |  | SBP-box transcription factor# | N | |
miR156 | GRMZM2G126018 | CDS | Â | Â | 2.00 (2) | Â | SBP-box transcription factor# | [28] | N |
miR159 | GRMZM2G139688 | CDS | 76.00 (2) | 169.00 (0) | 86.00 (2) | 3.00 (2) | MYB domain transcription factor# | N | |
miR159 | GRMZM2G038195 | CDS | 2.5 (2) | Â | 5.50 (2) | Â | Metallophosphoesterase# | N | N |
miR159 | GRMZM2G093789 | CDS | Â | 0.67 (3) | Â | Â | MYB domain transcription factor# | [28] | N |
miR159 | GRMZM2G167088 | CDS | Â | 2.00 (2) | Â | 0.33 (4) | MYB domain transcription factor# | N | N |
miR159 | GRMZM2G416652 | CDS | Â | 2.00 (2) | Â | 0.33 (4) | Homeodomain-like# | N | N |
miR159 | GRMZM2G028054 | CDS | Â | 24.00 (2) | Â | Â | MYB domain transcription factor# | N | |
miR159 | GRMZM2G075064 | CDS | Â | 0.67 (2) | Â | Â | MYB domain transcription factor# | N | N |
miR159 | GRMZM2G423833 | CDS | Â | 0.67 (3) | Â | Â | MYB domain transcription factor# | [28] | N |
miR159 | GRMZM2G089361 | CDS | Â | Â | Â | 1.33 (3) | TCP Transcription factor# | [26] | N |
miR159 | GRMZM2G387828 | CDS | Â | Â | Â | 4.00 (1) | unknown | N | N |
miR160 | GRMZM2G005284 | CDS | 2.00 (1) | 2.00 (2) | Â | Â | Auxin response factor# | N | N |
miR160 | AC207656.3_FGT002 | CDS | 6.50 (0) | 18.00 (2) | Â | Â | Auxin response factor# | [26] | N |
miR160 | GRMZM2G159399 | CDS | 8.5 (2) | 23.00 (2) | Â | 1.00 (4) | Auxin response factor# | N | |
miR160 | GRMZM5G808366 | CDS | 10.00 (0) | 3.00 (2) | 32.00 (1) | Â | Auxin response factor | N | N |
miR160 | GRMZM2G153233 | CDS | 24.00 (0) | 68.00 (0) | 37.00 (0) | 1.00 (4) | Auxin response factor# | N | |
miR160 | GRMZM2G390641 | CDS | Â | 2.33 (0) | 5.00 (2) | Â | Auxin response factor# | [26] | N |
miR160 | GRMZM2G081406 | CDS | Â | 2.33 (3) | 5.00 (3) | Â | Auxin response factor# | N | |
miR162 | GRMZM2G040762 | CDS | Â | Â | Â | 1.00 (4) | DICER-LIKE1 | N | N |
miR164 | GRMZM2G457630 | 5′-UTR |  | 2.50 (0) |  |  | No apical meristem (NAM) protein | N | N |
miR164 | GRMZM2G370846 | 3′-UTR |  |  | 2.33 (1) |  | No apical meristem (NAM) protein | N | N |
miR164 | GRMZM2G370850 | 3′-UTR |  |  | 2.33 (1) |  | No apical meristem (NAM) protein | N | N |
miR164 | GRMZM2G393433 | CDS | Â | Â | 2.50 (3) | Â | Helix-loop-helix DNA-binding# | [28] | N |
miR164 | GRMZM2G163975 | CDS | - | - | 2.50 (1) | - | Helix-loop-helix DNA-binding# | N | N |
miR166 | GRMZM2G109987 | CDS | 0.6 (3) | 2.40 (2) | 15.80 (2) | 27.80 (2) | bZIP transcription factor (rld1)# | [28] | N |
miR166 | GRMZM2G042250 | CDS | Â | 2.00 (2) | 15.75 (2) | 17.00 (2) | bZIP transcription factor (rld2)# | [28] | N |
miR166 | GRMZM2G469551 | CDS | Â | Â | 25.50 (2) | 28.00 (0) | bZIP transcription factor# | [26] | N |
miR166 | GRMZM2G123644 | CDS | Â | Â | Â | 0.60 (2) | unknown | [26] | N |
miR166 | GRMZM2G336718 | CDS | Â | Â | Â | 0.60 (2) | unknown | [26] | N |
miR166 | GRMZM2G055957 | 3′-UTR |  |  |  | 9.50 (0) | unknown | N | |
miR166 | GRMZM2G178102 | CDS | Â | Â | Â | 0.60 (3) | bZIP transcription factor# | N | |
miR166 | GRMZM2G003509 | CDS | Â | Â | Â | 0.60 (2) | bZIP transcription factor# | N | |
miR167 | GRMZM2G028980 | CDS | Â | 77.00 (0) | Â | Â | Auxin response factor# | [26] | N |
miR167 | GRMZM2G089640 | CDS | Â | 74.00 (0) | Â | 40.50 (0) | Auxin response factor# | N | |
miR167 | GRMZM2G078274 | CDS | Â | Â | 6.60 (2) | 147.80 (0) | Auxin response factor# | N | |
miR167 | GRMZM2G475882 | CDS | Â | Â | 6.60 (2) | Â | Auxin response factor# | N | |
miR169 | GRMZM5G829103 | 3′-UTR | 32.00 (2) | 1923.40 (0) | 24.60 (2) | 3.40 (2) | CCAAT-binding transcription factor | N | |
miR169 | GRMZM2G165488 | 3′-UTR | 7.25 (2) | 2804.25 (0) | 8.25 (2) | 1.25 (2) | CCAAT-binding transcription factor# | [30] | |
miR169 | GRMZM2G037630 | 3′-UTR | 12.00 (2) | 13.00 (2) |  | 2.00 (2) | CCAAT-binding transcription factor | N | |
miR169 | GRMZM2G000686 | 3′-UTR | 3.60 (2) | 21.80 (0) | 2.70 (2) | 0.10 (4) | CCAAT-binding transcription factor# | N | |
miR169 | GRMZM5G853836 | 3′-UTR | 21.00 (2) | 50.00 (2) | 27.50 (2) |  | unknown | N | |
miR169 | GRMZM5G857944 | 3′-UTR | 129.67 (0) | 139.00 (0) | 67.33 (0) | 16.00 (0) | CCAAT-binding transcription factor | N | |
miR169 | GRMZM2G038303 | 3′-UTR | 17.00 (2) | 4.00 (2) | 23.00 (0) | 12.00 (0) | CCAAT-binding transcription factor# | N | |
miR169 | GRMZM5G849099 | 3′-UTR | 4.00 (2) |  |  |  | unknown | N | N |
miR169 | GRMZM2G409430 | CDS | 3.50 (0) | Â | Â | Â | unknown | N | N |
miR169 | GRMZM2G091964 | 3′-UTR | 138.67 (2) | 257.33 (0) | 27.00 (2) | 99.33 (0) | CCAAT-binding transcription factor# | [30] | |
miR169 | GRMZM2G078124 | CDS/3′-UTR |  | 1.00 (2) |  |  | Molluscan rhodopsin C-terminal tail# | [30] | |
miR171 | GRMZM2G418899 | CDS | 1.80 (2) | 80.40 (0) | 4.60 (2) | 0.60 (2) | GRAS transcription factor# | N | |
miR171 | GRMZM2G037792 | CDS | 1.80 (3) | 80.40 (0) | 4.60 (3) | 0.60 (3) | GRAS transcription factor# | [25] | |
miR171 | GRMZM5G825321 | CDS | 1.80 (2) | 80.40 (0) | 4.60 (3) | 0.60 (2) | GRAS transcription factor | N | |
miR171 | GRMZM2G110579 | CDS | 0.33 (4) | 35.67 (2) | 2.67 (3) | 1.67 (2) | GRAS transcription factor | N | |
miR171 | GRMZM2G098800 | CDS | 1.80 (2) | 29.67 (0) | 2.67 (3) | 1.67 (2) | GRAS transcription factor# | N | |
miR172 | GRMZM2G176175 | CDS | 1.40 (3) | 9.20 (0) | 6.40 (0) | 1.80 (0) | AP2 transcription factor (sid1)#* | ||
miR172 | GRMZM5G862109 | CDS/3′-UTR | 1.40 (3) | 80.20 (2) | 8.73 (2) | 1.80 (2) | AP2 transcription factor (ids1)#* | [28] | |
miR172 | GRMZM2G138676 | CDS | 0.20 (4) | Â | Â | Â | AP2 transcription factor | N | N |
miR172 | GRMZM2G174784 | CDS/3′-UTR | 1.00 (3) | 3.00 (2) | 15.00 (2) |  | AP2 transcription factor# | [28] | N |
miR172 | GRMZM2G076602 | CDS | Â | 10.00 (0) | 13.00 (0) | Â | AP2 transcription factor# | [30] | N |
miR172 | GRMZM5G879527 | 3′-UTR |  |  |  | 2.50 (0) | AP2 transcription factor | N | N |
miR172 | GRMZM2G160730 | 3′-UTR |  |  |  | 0.50 (4) | Glossy15#* | [36] | |
miR319 | GRMZM2G412073 | CDS | 4.00 (3) | Â | Â | Â | unknown# | N | N |
miR319 | GRMZM2G028054 | CDS | 5.00 (2) | 2.00 (2) | Â | 7.33 (2) | MYB domain transcription factor# | N | |
miR319 | GRMZM2G180568 | CDS | Â | 3.00 (0) | 17.00 (1) | Â | unknown | N | N |
miR319 | GRMZM2G020805 | CDS | Â | 1.00 (4) | Â | Â | unknown | N | |
miR319 | GRMZM2G089361 | CDS | Â | 5.00 (2) | 8.33 (0) | 88.00 (0) | TCP Transcription factor# | N | |
miR319 | GRMZM2G115516 | CDS | Â | 5.00 (2) | 8.33 (2) | 88.00 (0) | TCP Transcription factor# | N | |
miR319 | GRMZM2G109843 | CDS | Â | Â | Â | 53.33 (0) | MYB domain transcription factor | [30] | N |
miR319 | GRMZM2G056612 | CDS | Â | Â | Â | 70.33 (0) | TCP Transcription factor | N | N |
miR319 | GRMZM2G015037 | CDS | Â | Â | Â | 0.33 (4) | MYB domain transcription factor | [26] | N |
miR319 | AC205574.3_FG006 | CDS | Â | Â | Â | 0.33 (4) | TCP Transcription factor | [28] | N |
miR390 | GRMZM2G124744 | 3′-UTR |  | 35.33 (0) |  |  | Inorganic pyrophosphatase | [28] | N |
miR390 | GRMZM2G155490 | 3′-UTR |  |  | 56.00 (0) |  | unknown# | N | N |
miR390 | GRMZM5G806469 | 3′-UTR |  |  | 13.00 (2) |  | unknown | [28] | N |
miR390 | GRMZM2G304745 | CDS | Â | Â | 16.00 (1) | Â | Leucine-rich repeat# | N | N |
miR393 | GRMZM2G135978 | CDS | Â | 7.00 (2) | 10.00 (2) | Â | Transport inhibitor response 1-like | N | |
miR394 | GRMZM2G119650 | CDS | 3.00 (3) | 20.00 (2) | Â | 3.00 (2) | Cyclin-like F-box# | [26] | [28] |
miR394 | GRMZM2G064954 | CDS | Â | 18.00 (2) | 14.00 (2) | 13.00 (2) | Cyclin-like F-box# | N | |
miR395 | GRMZM2G149952 | CDS | Â | 1.00 (4) | Â | Â | ATP-sulfurylase# | N | |
miR396 | GRMZM2G018414 | CDS | 2.50 (2) | Â | Â | 447.50 (0) | Glutamine-Leucine-Glutamine# | N | N |
miR396 | GRMZM2G099862 | CDS | 5.00 (2) | Â | 2.25 (3) | 30.75 (0) | Glutamine-Leucine-Glutamine# | [30] | N |
miR396 | GRMZM2G098594 | CDS | 1.00 (2) | Â | Â | 0.33 (3) | Glutamine-Leucine-Glutamine# | N | N |
miR396 | GRMZM2G119359 | CDS | 1.00 (3) | Â | Â | 0.33 (3) | Glutamine-Leucine-Glutamine | N | N |
miR396 | GRMZM2G478709 | CDS | 8.00 (2) | 0.50 (4) | 4.00 (3) | Â | SKI-interacting protein SKIP# | N | N |
miR396 | GRMZM2G124566 | CDS | Â | 0.33 (4) | Â | Â | Growth-regulating factor# | N | N |
miR396 | GRMZM2G045977 | CDS | Â | 0.33 (4) | Â | Â | Growth-regulating factor# | N | N |
miR396 | GRMZM2G041223 | CDS | Â | 0.33 (4) | Â | Â | Putative growth-regulating factor 6# | [30] | N |
miR396 | GRMZM2G129147 | CDS | Â | 0.33 (4) | Â | Â | Growth-regulating factor (GDF5)# | [30] | N |
miR396 | GRMZM2G178261 | CDS | Â | 0.50 (3) | Â | Â | Growth-regulating factor 1 (GDF1)# | N | |
miR396 | GRMZM2G443903 | CDS | Â | 0.50 (3) | Â | Â | K Homology# | [30] | N |
miR396 | GRMZM2G033612 | CDS | Â | Â | 16.00 (2) | 637.00 (0) | Glutamine-Leucine-Glutamine | N | N |
miR397 | GRMZM2G094699 | CDS | Â | Â | 5.00 (2) | Â | unknown | N | N |
miR398 | AC234183.1_FGT002 | CDS | Â | Â | Â | 17.00 (0) | unknown | N | N |
miR399 | GRMZM2G153087 | CDS | 1.00 (4) | Â | Â | Â | PHD finger protein | N | N |
miR399 | GRMZM2G082384 | CDS | Â | Â | 2.25 (3) | Â | Mrp, conserved site;ATPase-like | N | N |
miR529 | GRMZM2G318882 | 5′-UTR | 0.03 (1) |  |  |  | SBP-box transcription factor | N | N |
miR529 | GRMZM2G136158 | CDS | 0.03 (1) | 0.04 (1) | 0.01 (1) | 0.001 (1) | SBP-box transcription factor | N | N |
miR529 | GRMZM2G031501 | 5′-UTR | 0.20 (4) |  |  |  | unknown | N | |
miR529 | GRMZM5G878561 | CDS | Â | 1.50 (3) | Â | 1.50 (2) | SBP-box transcription factor | [26] | N |
miR529 | GRMZM2G031983 | 5′-UTR |  | 0.04 (1) | 0.01 (1) |  | SBP-box transcription factor | N | N |
miR529 | GRMZM2G371033 | CDS | Â | 1.50 (3) | Â | 1.50 (2) | SBP-box transcription factor | [26] | N |
miR529 | GRMZM2G163813 | CDS/3′-UTR |  | 0.33 (4) |  |  | SBP-box transcription factor# | [26] | N |
miR529 | GRMZM2G149022 | CDS | Â | Â | 0.01 (1) | Â | unknown | N | N |
miR529 | GRMZM2G084947 | 5′-UTR |  |  | 0.01 (1) |  | unknown | N | N |
miR529 | GRMZM2G169121 | 3′-UTR |  |  | 0.01 (1) |  | unknown | N | N |
miR529 | GRMZM2G062052 | 5′-UTR |  |  | 0.01 (1) |  | ZCN19 protein | N | N |
miR529 | GRMZM2G148074 | 5′-UTR |  |  | 0.01 (1) |  | Transcription factor, K-box | N | N |
miR529 | GRMZM2G031870 | 5′-UTR |  |  | 0.01 (1) |  | SBP-box transcription factor | N | N |
miR529 | GRMZM2G096234 | 3′-UTR |  |  | 0.01 (1) |  | Non-specific lipid-transfer protein | N | N |
miR529 | GRMZM2G141955 | 5′-UTR |  |  | 0.01 (1) |  | SBP-box transcription factor | N | N |
miR529 | AC233899.1_FGT004 | 5′-UTR |  |  | 0.01 (1) |  | homeodomain-leucine zipper transcription factor | N | N |
miR529 | GRMZM2G165355 | CDS | Â | Â | 0.01 (1) | Â | zinc finger protein 7 | N | N |
miR529 | GRMZM2G131280 | 3′-UTR |  |  |  | 0.001 (1) | SBP-box transcription factor | N | N |
TAS3 | GRMZM2G056120 | CDS | 0.50 (3) | 1.25 (3) | 11.25 (2) | 5.00 (2) | DNA binding | N | N |
TAS3 | GRMZM5G874163 | 3′-UTR | 0.50 (3) | 1.58 (2) | 11.25 (2) | 5.00 (2) | DNA binding | N | N |
TAS3 | GRMZM2G437460 | CDS | Â | 11.00 (2) | 8.50 (2) | 0.50 (4) | Auxin response factor | N | N |
TAS3 | GRMZM2G030710 | CDS | Â | Â | 1287.00 (0) | 1.00 (4) | DNA binding | N | N |