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Table 2 Number of genomic variants located in exons, introns, UTRs and intergenic regions over three subgenomes

From: Beyond genomic variation - comparison and functional annotation of three Brassica rapagenomes: a turnip, a rapid cycling and a Chinese cabbage

  Turnip Rapid cycling
Type (alphabetical order) LF MF1 MF2 LF MF1 MF2
EXON-Count 80,093 36,695 44,991 89,042 42,165 49,868
EXON-Length 170,181 138,159 101,503 238,506 112,953 122,966
INTERGENIC-Count 243,148 129,852 179,159 280,600 154,959 192,416
INTERGENIC-Length 620,502 355,733 460,022 745,887 447,983 534,174
INTRON-Count 138,428 69,785 83,492 160,185 80,189 94,772
INTRON-Length 312,855 160,185 179,874 357,133 166,618 216,723
UTR-Count 8,837 4,816 5,995 10,340 5,673 6,619
UTR-Length 20,918 9,232 11,538 34,871 11,044 12,382
  1. Genomic variants mapped on four different types of genome regions grouped by three subgenomes (LF, MF1, MF2) in turnip and rapid cycling. The counts indicate the number of variations in each genomic region; the length is the sum over all genomic variations. SNPs are defined as being 1 bp long.