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Table 2 Number of genomic variants located in exons, introns, UTRs and intergenic regions over three subgenomes

From: Beyond genomic variation - comparison and functional annotation of three Brassica rapagenomes: a turnip, a rapid cycling and a Chinese cabbage

 

Turnip

Rapid cycling

Type (alphabetical order)

LF

MF1

MF2

LF

MF1

MF2

EXON-Count

80,093

36,695

44,991

89,042

42,165

49,868

EXON-Length

170,181

138,159

101,503

238,506

112,953

122,966

INTERGENIC-Count

243,148

129,852

179,159

280,600

154,959

192,416

INTERGENIC-Length

620,502

355,733

460,022

745,887

447,983

534,174

INTRON-Count

138,428

69,785

83,492

160,185

80,189

94,772

INTRON-Length

312,855

160,185

179,874

357,133

166,618

216,723

UTR-Count

8,837

4,816

5,995

10,340

5,673

6,619

UTR-Length

20,918

9,232

11,538

34,871

11,044

12,382

  1. Genomic variants mapped on four different types of genome regions grouped by three subgenomes (LF, MF1, MF2) in turnip and rapid cycling. The counts indicate the number of variations in each genomic region; the length is the sum over all genomic variations. SNPs are defined as being 1 bp long.
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BMC Genomics

ISSN: 1471-2164

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