Table 8 Flowering time related lost genes in three B. rapa genotypes
Genotype | Ara ID | Gene name | Pathway | Gene full name | Protein function |
|---|---|---|---|---|---|
Rapid cycling | AT2G32950 | COP1 | Photoperiod | CONSTITUTIVE PHOTOMORPHOGENIC 1 | E3 ubiquitin ligase |
Rapid cycling | AT3G11440 | MYB65 | Gibberellin | MYB65 | MYB transcription factor |
Rapid cycling | AT3G20740 | FIS3 | Vernalization | FERTILIZATION-INDEPENDENT ENDOSPERM | Encodes a protein similar to the transcriptional regular of the animal Polycomb group |
Rapid cycling | AT5G03790 | LMI1 | Flower development | LATE MERISTEM IDENTITY 1 | HD-Zip transcription factor |
Rapid cycling | AT5G47010 | LBA1 | Metabolic process | LOW-LEVEL BETA-AMYLASE 1 | Required for nonsense-mediated mRNA decay |
Chiifu | AT1G04440 | CKL13 | Vernalization | CASEIN KINASE LIKE 13 | Protein serine/threonine kinase activity |
Chiifu | AT4G25470 | CBF2 | Vernalization | C-REPEAT/DRE BINDING FACTOR 2 | Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family |
Chiifu | AT5G59710 | VIP2 | Vernalization | VIRE2 INTERACTING PROTEIN 2 | Encodes a nuclear-localized NOT (negative on TATA-less) domain-containing |
Turnip | AT1G53090 | SPA4 | Photoperiod | SPA1-RELATED 4 | WD-40 and protein kinase-like domain |
Turnip | AT4G27430 | CIP7 | Photoperiod | COP1-INTERACTING PROTEIN 7 | - |
Turnip | AT5G64813 | LIP1 | Photoperiod | LIGHT INSENSITIVE PERIOD 1 | GTPase |