Figure 11

Previously reported large deletions found to be false positives, and missed large deletions. a) High density of SNVs within a previously reported deletion (niDf51). b) A previously reported deletion (niDf71) covered by unique reads. c) A deletion of a cluster of ncRNA genes. d) Deletion of an intron of a gene. e) Deletion of a Cemar1 transposon, covered by non-unique reads due to its duplicative nature. c), d) and e) are missed by a protein-coding exon-based oaCGH approach. Reads in green indicate those aligned on the positive strand, whereas reads in yellow indicate those aligned on the negative strand.